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sp. nov.,一种新型成员,从东海湄山岛的沿海泥滩沉积物中分离得到。

sp. nov., a novel member isolated from coastal mudflat sediment of Meishan Islandin the East China Sea.

机构信息

Li Dak Sum Yip Yio Chin Kenneth Li Marine Biopharmaceutical Research Center, Ningbo University, Ningbo, 315800, PR China.

Ningbo Institute of Marine Medicine, Peking University, Ningbo, Zhejiang 315800, PR China.

出版信息

Int J Syst Evol Microbiol. 2024 May;74(5). doi: 10.1099/ijsem.0.006374.

Abstract

A Gram-negative, rod-shaped, non-motile and strictly aerobic strain, designated NBU2979, was isolated from a coastal mudflat located on Meishan Island in the East China Sea. Strain NBU2979 grew optimally at 32 °C, with 2.0 % NaCl (w/v) and at pH 7.0-7.5. The predominant fatty acid (>10 %) was iso-C. The major polar lipids included phosphatidylglycerol, phosphatidylethanolamine, diphosphatidylglycerol, phosphatidyldimethylethanolamine, phosphatidylcholine, an unidentified glycolipid, two unidentified aminophospholipids, an unidentified phospholipid and an unidentified lipid. The only respiratory quinone was ubiquinone-8. Comparative analysis of 16S rRNA gene sequences showed that strain NBU2979 exhibited highest similarity to F2 (98.0 %), S1101 (97.5 %), KMM 3900 (96.6 %), 3539 (95.5 %), sw153 (95.2 %) and S6413 (94.9 %). Phylogenetic analyses indicated that strain NBU2979 clustered with the genus and was closely related to strain F2. The average nucleotide identity and digital DNA-DNA hybridization values between strain NBU2979 and related species of genus were well below the threshold limit for prokaryotic species delineation. The DNA G+C content of strain NBU2979 was 51.6 mol%. Based on its phenotypic, chemotaxonomic and genotypic data, strain NBU2979 (=KCTC 82911=MCCC 1K06402) is considered to be a representative of a novel species in the genus , for which the name sp. nov. is proposed.

摘要

一株革兰氏阴性、杆状、非运动和严格需氧的菌株,被命名为 NBU2979,是从中国东海梅山岛的一个沿海泥滩中分离得到的。菌株 NBU2979 在 32°C、2.0%(w/v)NaCl 和 pH7.0-7.5 的条件下生长最佳。主要脂肪酸(>10%)为 iso-C。主要极性脂包括磷脂酰甘油、磷脂酰乙醇胺、双磷脂酰甘油、磷脂酰二甲乙醇胺、磷脂酰胆碱、一种未鉴定的糖脂、两种未鉴定的氨基磷脂、一种未鉴定的磷脂和一种未鉴定的脂类。唯一的呼吸醌是泛醌-8。16S rRNA 基因序列的比较分析表明,菌株 NBU2979与 F2(98.0%)、S1101(97.5%)、KMM 3900(96.6%)、3539(95.5%)、sw153(95.2%)和 S6413(94.9%)最为相似。系统发育分析表明,菌株 NBU2979与属内的其他菌株聚类,并与菌株 F2 关系最为密切。菌株 NBU2979 与属内相关种的平均核苷酸同一性和数字 DNA-DNA 杂交值均远低于原核生物种划分的阈值。菌株 NBU2979 的 DNA G+C 含量为 51.6mol%。基于其表型、化学分类和基因型数据,菌株 NBU2979(=KCTC 82911=MCCC 1K06402)被认为是属内一个新种的代表,因此建议将其命名为 sp. nov.。

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