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短线性同聚肽的阴离子结合特性。

Anion-Binding Properties of Short Linear Homopeptides.

机构信息

Department of Chemistry, Faculty of Science, Horvatovac 102a, 10000 Zagreb, Croatia.

Department of Organic Chemistry and Biochemistry, Ruđer Bošković Institute, Bijenička Cesta 54, 10000 Zagreb, Croatia.

出版信息

Int J Mol Sci. 2024 May 11;25(10):5235. doi: 10.3390/ijms25105235.

Abstract

A comprehensive thermodynamic and structural study of the complexation affinities of tetra (), penta (), and hexaphenylalanine () linear peptides towards several inorganic anions in acetonitrile (MeCN) and ,-dimethylformamide (DMF) was carried out. The influence of the chain length on the complexation thermodynamics and structural changes upon anion binding are particularly addressed here. The complexation processes were characterized by means of spectrofluorimetric, H NMR, microcalorimetric, and circular dichroism spectroscopy titrations. The results indicate that all three peptides formed complexes of 1:1 stoichiometry with chloride, bromide, hydrogen sulfate, dihydrogen phosphate (DHP), and nitrate anions in acetonitrile and DMF. In the case of hydrogen sulfate and DHP, anion complexes of higher stoichiometries were observed as well, namely those with 1:2 and 2:1 (peptide:anion) complexes. Anion-induced peptide backbone structural changes were studied by molecular dynamic simulations. The anions interacted with backbone amide protons and one of the -terminal amine protons through hydrogen bonding. Due to the anion binding, the main chain of the studied peptides changed its conformation from elongated to quasi-cyclic in all 1:1 complexes. The accomplishment of such a conformation is especially important for cyclopeptide synthesis in the head-to-tail macrocyclization step, since it is most suitable for ring closure. In addition, the studied peptides can act as versatile ionophores, facilitating transmembrane anion transport.

摘要

我们对四()、五()和六()苯丙氨酸()线性肽与几种无机阴离子在乙腈(MeCN)和二甲基甲酰胺(DMF)中的络合亲和力进行了全面的热力学和结构研究。这里特别关注了链长对配合物热力学和结构变化的影响。通过荧光光谱法、H NMR、微量量热法和圆二色性光谱滴定法对配合物过程进行了表征。结果表明,在乙腈和 DMF 中,所有三种肽都与氯、溴、硫酸氢根、磷酸二氢根(DHP)和硝酸盐阴离子形成了 1:1 化学计量比的配合物。对于硫酸氢根和 DHP,还观察到了更高化学计量比的阴离子配合物,即 1:2 和 2:1(肽:阴离子)配合物。通过分子动力学模拟研究了阴离子诱导的肽骨架结构变化。阴离子通过氢键与肽骨架上的酰胺质子和 -末端氨基质子相互作用。由于阴离子的结合,研究的肽的主链构象从伸长态转变为所有 1:1 配合物中的准环状。对于从头至尾的大环化步骤中的环肽合成,这种构象的实现尤为重要,因为它最适合环闭合。此外,这些肽可以作为多功能离子载体,促进阴离子跨膜运输。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15a7/11121566/8dd9376e428a/ijms-25-05235-sch001.jpg

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