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植物中 CRISPR/Cas 介导的基因组工程的 V 型效应因子。

The type V effectors for CRISPR/Cas-mediated genome engineering in plants.

机构信息

State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangdong Laboratory for Lingnan Modern Agriculture, College of Life Sciences, South China Agricultural University, Guangzhou 510642, China.

College of Agriculture, South China Agricultural University, Guangzhou 510642, China.

出版信息

Biotechnol Adv. 2024 Sep;74:108382. doi: 10.1016/j.biotechadv.2024.108382. Epub 2024 May 25.

Abstract

A plethora of CRISPR effectors, such as Cas3, Cas9, and Cas12a, are commonly employed as gene editing tools. Among these, Cas12 effectors developed based on Class II type V proteins exhibit distinct characteristics compared to Class II type VI and type II effectors, such as their ability to generate non-allelic DNA double-strand breaks, their compact structures, and the presence of a single RuvC-like nuclease domain. Capitalizing on these advantages, Cas12 family proteins have been increasingly explored and utilized in recent years. However, the characteristics and applications of different subfamilies within the type V protein family have not been systematically summarized. In this review, we focus on the characteristics of type V effector (CRISPR/Cas12) proteins and the current methods used to discover new effector proteins. We also summarize recent modifications based on engineering of type V effectors. In addition, we introduce the applications of type V effectors for gene editing in animals and plants, including the development of base editors, tools for regulating gene expression, methods for gene targeting, and biosensors. We emphasize the prospects for development and application of CRISPR/Cas12 effectors with the goal of better utilizing toolkits based on this protein family for crop improvement and enhanced agricultural production.

摘要

大量的 CRISPR 效应物,如 Cas3、Cas9 和 Cas12a,常被用作基因编辑工具。在这些效应物中,基于 II 类 V 型蛋白开发的 Cas12 效应物与 II 类 VI 型和 II 类效应物具有不同的特征,例如它们能够产生非等位 DNA 双链断裂、结构紧凑以及存在单个 RuvC 样核酸酶结构域。利用这些优势,Cas12 家族蛋白在近年来得到了越来越多的探索和利用。然而,V 型蛋白家族内不同亚家族的特征和应用尚未得到系统总结。在这篇综述中,我们重点介绍了 V 型效应物(CRISPR/Cas12)蛋白的特征以及目前用于发现新效应物蛋白的方法。我们还总结了基于 V 型效应物工程的最新修饰。此外,我们介绍了 V 型效应物在动植物基因编辑中的应用,包括碱基编辑器的开发、基因表达调控工具、基因靶向方法和生物传感器。我们强调了 CRISPR/Cas12 效应物的发展和应用前景,旨在更好地利用基于该蛋白家族的工具包来改善作物和提高农业生产。

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