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探讨精氨酸提高腔肠素-海肾荧光素酶亲和力和酶稳定性的潜力:动力学和分子动力学研究。

Exploring the Potential of Arginine to Increase Coelenterazine-Renilla Luciferase Affinity and Enzyme Stability: Kinetic and Molecular Dynamics Studies.

机构信息

Department of Cell and Molecular Biology and Microbiology, Faculty of Biological Science and Technology, University of Isfahan, Isfahan, Iran.

Nanobiotechnology Research Center, Avicenna Research Institute, ACECR, Tehran, Iran.

出版信息

Protein J. 2024 Aug;43(4):739-750. doi: 10.1007/s10930-024-10208-x. Epub 2024 Jun 2.

DOI:10.1007/s10930-024-10208-x
PMID:38824468
Abstract

Renilla luciferase catalyzes the oxidation of coelenterazine to coelenteramide and results in the emission of a photon of light. Although Renilla luciferase has various applications in biotechnology, its low thermal stability limits the development of its applications. Arginine is a well-known stabilizing amino acid that plays a key role in protein stabilization against inactivation. However, its impact on enzyme properties is unpredictable. This study investigates the impact of arginine on the kinetics and thermal stability of Renilla luciferase. The enzyme's performance was significantly enhanced in the presence of arginine, with catalytic efficiency increasing by 3.31-fold and 3.08-fold when exposed to 0.2 M and 0.3 M arginine, respectively. Additionally, arginine improved the thermal stability of Renilla luciferase. Molecular dynamics simulation showed that the addition of 0.2 M arginine reduced the binding of coelenteramide, the reaction product and an enzyme inhibitor, to the active site of the Renilla luciferase. Therefore, the release of the product was accelerated, and the affinity of Renilla luciferase for coelenterazine increased. Furthermore, Molecular dynamics studies indicated an increased network of water molecules surrounding Renilla luciferase in the presence of 0.2 M arginine. This network potentially enhances the hydrophobic effect on the protein structure, ultimately improving enzyme stability. The findings of this study hold promise for the development of commercial kits incorporating Renilla luciferase.

摘要

海肾荧光素酶催化腔肠素氧化为腔肠酰胺,导致光子的发射。虽然海肾荧光素酶在生物技术中有各种应用,但它的低热稳定性限制了其应用的发展。精氨酸是一种众所周知的稳定氨基酸,在蛋白质稳定方面起着关键作用,防止其失活。然而,它对酶性质的影响是不可预测的。本研究调查了精氨酸对海肾荧光素酶动力学和热稳定性的影响。在精氨酸存在的情况下,该酶的性能显著增强,当暴露于 0.2M 和 0.3M 精氨酸时,催化效率分别增加了 3.31 倍和 3.08 倍。此外,精氨酸提高了海肾荧光素酶的热稳定性。分子动力学模拟表明,添加 0.2M 精氨酸降低了腔肠酰胺的结合,腔肠酰胺是反应产物和酶抑制剂,与海肾荧光素酶的活性部位结合。因此,产物的释放被加速,海肾荧光素酶对腔肠素的亲和力增加。此外,分子动力学研究表明,在存在 0.2M 精氨酸的情况下,海肾荧光素酶周围的水分子网络增加。这个网络可能增强了对蛋白质结构的疏水作用,最终提高了酶的稳定性。本研究的结果为开发包含海肾荧光素酶的商业试剂盒提供了希望。

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