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不同动物门毒液相关微环境中的多种RNA病毒。

Diverse RNA viruses in the venom-related microenvironment of different animal phyla.

作者信息

Ji Jingkai, Li Cixiu, Hu Tao, Tian Zhongshuai, Li Juan, Xu Lin, Zhou Hong, Holmes Edward C, Shi Weifeng

机构信息

School of Life Sciences, Shandong First Medical University & Shandong Academy of Medical Sciences, No. 619 Changcheng Road, Taian 271000, China.

Key Laboratory of Emerging Infectious Diseases in Universities of Shandong, Shandong First Medical University & Shandong Academy of Medical Sciences, No. 2 Yingshengdonglu, Taian 271000, China.

出版信息

Virus Evol. 2024 Mar 5;10(1):veae024. doi: 10.1093/ve/veae024. eCollection 2024.

Abstract

Venom is known as the source of natural antimicrobial products. Previous studies have largely focused on the expression of venom-related genes and the biochemical components of venom. With the advent of metagenomic sequencing, many more microorganisms, especially viruses, have been identified in highly diverse environments. Herein, we investigated the RNA virome in the venom-related microenvironment through analysis of a large volume of venom-related RNA-sequencing data mined from public databases. From this, we identified viral sequences belonging to thirty-six different viruses, of which twenty-two were classified as 'novel' as they exhibited less than 90 per cent amino acid identity to known viruses in the RNA-dependent RNA polymerase. Most of these novel viruses possessed genome structures similar to their closest relatives, with specific alterations in some cases. Phylogenetic analyses revealed that these viruses belonged to at least twenty-two viral families or unclassified groups, some of which were highly divergent from known taxa. Although further analysis failed to find venom-specific viruses, some viruses seemingly had much higher abundance in the venom-related microenvironment than in other tissues. In sum, our study provides insights into the RNA virome of the venom-related microenvironment from diverse animal phyla.

摘要

毒液被认为是天然抗菌产品的来源。以往的研究主要集中在毒液相关基因的表达和毒液的生化成分上。随着宏基因组测序的出现,在高度多样化的环境中发现了更多的微生物,尤其是病毒。在此,我们通过分析从公共数据库中挖掘的大量与毒液相关的RNA测序数据,研究了与毒液相关的微环境中的RNA病毒群落。据此,我们鉴定出属于36种不同病毒的病毒序列,其中22种被归类为“新病毒”,因为它们在依赖RNA的RNA聚合酶中与已知病毒的氨基酸同一性低于90%。这些新病毒中的大多数具有与其最亲近亲属相似的基因组结构,在某些情况下有特定的改变。系统发育分析表明,这些病毒至少属于22个病毒科或未分类的类群,其中一些与已知分类群高度不同。尽管进一步分析未能找到毒液特异性病毒,但一些病毒在与毒液相关的微环境中的丰度似乎比在其他组织中高得多。总之,我们的研究为来自不同动物门的与毒液相关的微环境中的RNA病毒群落提供了见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7b63/11141596/0e71ea097dfd/veae024f1.jpg

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