Engineering Research Center for Selecting and Breeding New Tropical Crop Varieties, Ministry of Education; Tropical Biodiversity and Genomics Research Center, Hainan University, Haikou, 570228, China.
Sci Data. 2024 Jun 7;11(1):599. doi: 10.1038/s41597-024-03459-x.
Camellia crapnelliana Tutch., belonging to the Theaceae family, is an excellent landscape tree species with high ornamental values. It is particularly an important woody oil-bearing plant species with high ecological, economic, and medicinal values. Here, we first report the chromosome-scale reference genome of C. crapnelliana with integrated technologies of SMRT, Hi-C and Illumina sequencing platforms. The genome assembly had a total length of ~2.94 Gb with contig N50 of ~67.5 Mb, and ~96.34% of contigs were assigned to 15 chromosomes. In total, we predicted 37,390 protein-coding genes, ~99.00% of which could be functionally annotated. The chromosome-scale genome of C. crapnelliana will become valuable resources for understanding the genetic basis of the fatty acid biosynthesis, and greatly facilitate the exploration and conservation of C. crapnelliana.
金花茶(Camellia crapnelliana Tutch.)属于山茶科,是一种具有很高观赏价值的优良景观树种。它更是一种重要的木本油料植物,具有很高的生态、经济和药用价值。在这里,我们首次利用 SMRT、Hi-C 和 Illumina 测序平台的集成技术,报道了金花茶的染色体水平参考基因组。基因组组装的总长度约为 2.94 Gb,N50 约为 67.5 Mb,约 96.34%的序列被分配到 15 条染色体上。总共预测了 37390 个蛋白质编码基因,其中约 99.00%可以进行功能注释。金花茶的染色体水平基因组将成为了解脂肪酸生物合成遗传基础的宝贵资源,并极大地促进金花茶的开发和保护。