Department of Clinical Epidemiology and Center of Evidence-Based Medicine, The First Hospital of China Medical University, Shenyang, China.
Front Immunol. 2024 Jun 3;15:1371365. doi: 10.3389/fimmu.2024.1371365. eCollection 2024.
Hypoxia exerts a profound influence on the tumor microenvironment and immune response, shaping treatment outcomes and prognosis. Utilizing consistency clustering, we discerned two hypoxia subtypes in OPSCC bulk sequencing data from GEO. Key modules within OPSCC were identified through weighted gene correlation network analysis (WGCNA). Core modules underwent CIBERSORT immune infiltration analysis and GSEA functional enrichment. Univariate Cox and LASSO analyses were employed to construct prognostic models for seven hypoxia-related genes. Further investigation into clinical characteristics, the immune microenvironment, and TIDE algorithm prediction for immunotherapy response was conducted in high- and low-risk groups. scRNA-seq data were visually represented through TSNE clustering, employing the scissors algorithm to map hypoxia phenotypes. Interactions among cellular subpopulations were explored using the Cellchat package, with additional assessments of metabolic and transcriptional activities. Integration with clinical data unveiled a prevalence of HPV-positive patients in the low hypoxia and low-risk groups. Immunohistochemical validation demonstrated low TDO2 expression in HPV-positive (P16-positive) patients. Our prediction suggested that HPV16 E7 promotes HIF-1α inhibition, leading to reduced glycolytic activity, ultimately contributing to better prognosis and treatment sensitivity. The scissors algorithm effectively segregated epithelial cells and fibroblasts into distinct clusters based on hypoxia characteristics. Cellular communication analysis illuminated significant crosstalk among hypoxia-associated epithelial, fibroblast, and endothelial cells, potentially fostering tumor proliferation and metastasis.
缺氧对肿瘤微环境和免疫反应产生深远影响,影响治疗效果和预后。我们利用一致性聚类方法,在 GEO 的 OPSCC 批量测序数据中识别出两种缺氧亚型。通过加权基因相关网络分析(WGCNA)确定 OPSCC 中的关键模块。对核心模块进行 CIBERSORT 免疫浸润分析和 GSEA 功能富集。采用单因素 Cox 和 LASSO 分析构建 7 个与缺氧相关基因的预后模型。在高低风险组中进一步研究临床特征、免疫微环境和 TIDE 算法预测免疫治疗反应。使用剪刀算法将 scRNA-seq 数据通过 TSNE 聚类进行可视化表示,映射缺氧表型。使用 Cellchat 包探索细胞亚群之间的相互作用,并评估代谢和转录活性。与临床数据的整合揭示了低缺氧和低风险组中 HPV 阳性患者的患病率。免疫组织化学验证表明 HPV 阳性(P16 阳性)患者中 TDO2 表达较低。我们的预测表明,HPV16 E7 促进 HIF-1α 抑制,导致糖酵解活性降低,最终导致更好的预后和治疗敏感性。剪刀算法能够根据缺氧特征有效地将上皮细胞和成纤维细胞分离到不同的簇中。细胞通讯分析阐明了与缺氧相关的上皮细胞、成纤维细胞和内皮细胞之间的显著串扰,可能促进肿瘤增殖和转移。