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使用油漆滚筒从水下表面采集海洋环境DNA样本。

Marine eDNA sampling from submerged surfaces with paint rollers.

作者信息

Jarman Simon, Alexander Jason B, Dawkins Kathryn L, Lukehurst Sherralee S, Nester Georgia M, Wilkinson Shaun, Marnane Michael J, McDonald Justin I, Elsdon Travis S, Harvey Euan S

机构信息

School of Molecular and Life Sciences, Curtin University, Bentley, WA, Australia; eDNA Frontiers, Curtin University, Bentley, WA, Australia.

School of Molecular and Life Sciences, Curtin University, Bentley, WA, Australia.

出版信息

Mar Genomics. 2024 Aug;76:101127. doi: 10.1016/j.margen.2024.101127. Epub 2024 Jun 20.

Abstract

Environmental DNA (eDNA) analyses of species present in marine environments is the most effective biological diversity measurement tool currently available. eDNA sampling methods are an intrinsically important part of the eDNA biodiversity analysis process. Identification and development of eDNA sampling methods that are as rapid, affordable, versatile and practical as possible will improve rates of detection of marine species. Optimal outcomes of eDNA biodiversity surveys come from studies employing high levels of sampling replication, so any methods that make sampling faster and cheaper will improve scientific outcomes. eDNA sampling methods that can be applied more widely will also enable sampling from a greater range of marine surface micro-habitats, resulting in detection of a wider range of organisms. In this study, we compared diversity detection by several methods for sampling eDNA from submerged marine surfaces: polyurethane foam, nylon swabs, microfibre paint rollers, and sediment scoops. All of the methods produced a diverse range of species identifications, with >250 multicellular species represented by eDNA at the study site. We found that widely-available small paint rollers were an effective, readily available and affordable method for sampling eDNA from underwater marine surfaces. This approach enables the sampling of marine eDNA using extended poles, or potentially by remotely operated vehicles, where surface sampling by hand is impractical.

摘要

对海洋环境中存在的物种进行环境DNA(eDNA)分析是目前可用的最有效的生物多样性测量工具。eDNA采样方法是eDNA生物多样性分析过程中一个至关重要的内在组成部分。识别和开发尽可能快速、经济、通用且实用的eDNA采样方法将提高海洋物种的检测率。eDNA生物多样性调查的最佳结果来自采用高水平采样重复的研究,因此任何使采样更快、更便宜的方法都将改善科学成果。能够更广泛应用的eDNA采样方法还将能够从更广泛的海洋表面微生境进行采样,从而检测到更广泛的生物。在本研究中,我们比较了几种从淹没的海洋表面采集eDNA的方法的多样性检测结果:聚氨酯泡沫、尼龙拭子、微纤维油漆滚筒和沉积物勺。所有这些方法都产生了各种各样的物种鉴定结果,研究地点的eDNA代表了超过250种多细胞物种。我们发现,广泛使用的小型油漆滚筒是一种从水下海洋表面采集eDNA的有效、易于获得且经济的方法。这种方法能够使用伸缩杆或潜在地通过遥控车辆采集海洋eDNA,而手动进行表面采样是不切实际的。

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