School of Oceanography, Shanghai Jiao Tong University, Shanghai 200030, China; Key Laboratory for Polar Science, Polar Research Institute of China, Ministry of Natural Resources, Shanghai 200136, China.
College of Science, Shantou University, Shantou 515063, China.
Mar Genomics. 2024 Aug;76:101122. doi: 10.1016/j.margen.2024.101122. Epub 2024 May 14.
Pseudomonas species are known for their diverse metabolic abilities and broad ecological distribution. They are fundamental components of bacterial communities and perform essential ecological functions in the environment. A psychrotrophic Pseudomonas sp. IT1137 was isolated from intertidal sediment in the coastal region of the Fildes Peninsula, King George Island, Antarctica. The strain contained a circular chromosome of 5,346,697 bp with a G + C content of 61.66 mol% and one plasmid of 4481 bp with a G + C content of 64.61 mol%. A total of 4848 protein-coding genes, 65 tRNA genes and 15 rRNA genes were obtained. Genome sequence analysis revealed that strain IT1137 not only is a potentially novel species of the genus Pseudomonas but also harbors functional genes related to nitrogen, sulfur and phosphorus cycling. In addition, genes involved in alkane degradation, ectoine synthesis and cyclic lipopeptide (CLP) production were detected in the bacterial genome. The results indicate the potential of the strain Pseudomonas sp. IT1137 for biotechnological applications such as bioremediation and secondary metabolite production and are helpful for understanding bacterial adaptability and ecological function in cold coastal environments.
假单胞菌属以其多样的代谢能力和广泛的生态分布而闻名。它们是细菌群落的基本组成部分,在环境中发挥着重要的生态功能。一株嗜冷假单胞菌 IT1137 从南极洲乔治王岛菲尔德斯半岛沿海地区的潮间带沉积物中分离得到。该菌株含有一个 5,346,697 bp 的圆形染色体,G+C 含量为 61.66 mol%,一个 4481 bp 的质粒,G+C 含量为 64.61 mol%。共获得 4848 个蛋白编码基因、65 个 tRNA 基因和 15 个 rRNA 基因。基因组序列分析表明,菌株 IT1137 不仅是假单胞菌属的一个潜在新种,而且还拥有与氮、硫和磷循环有关的功能基因。此外,在细菌基因组中还检测到了与烷烃降解、海藻糖合成和环状脂肽(CLP)生产相关的基因。这些结果表明,该菌株假单胞菌属 IT1137 具有生物技术应用的潜力,如生物修复和次生代谢产物的生产,有助于理解细菌在寒冷沿海环境中的适应性和生态功能。