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基于钆的核磁共振自旋弛豫测量生物分子近表面静电势。

Gadolinium-Based NMR Spin Relaxation Measurements of Near-Surface Electrostatic Potentials of Biomolecules.

机构信息

Department of Biochemistry & Molecular Biology, Sealy Center for Structural Biology & Molecular Biophysics, University of Texas Medical Branch, Galveston, Texas 77555-1068, United States.

Department of Molecular Genetics, University of Toronto, Toronto, Ontario M5S 1A8, Canada.

出版信息

J Am Chem Soc. 2024 Jul 31;146(30):20788-20801. doi: 10.1021/jacs.4c04433. Epub 2024 Jul 19.

Abstract

NMR spectroscopy is an important tool for the measurement of the electrostatic properties of biomolecules. To this point, paramagnetic relaxation enhancements (PREs) of H nuclei arising from nitroxide cosolutes in biomolecular solutions have been used to measure effective near-surface electrostatic potentials (ϕ) of proteins and nucleic acids. Here, we present a gadolinium (Gd)-based NMR method, exploiting Gd chelates with different net charges, for measuring ϕ values and demonstrate its utility through applications to a number of biomolecular systems. The use of Gd-based cosolutes offers several advantages over nitroxides for ϕ measurements. First, unlike nitroxide compounds, Gd chelates enable electrostatic potential measurements on oxidation-sensitive proteins that require reducing agents. Second, the large electron spin quantum number of Gd (7/2) results in notably larger PREs for Gd chelates when used at the same concentrations as nitroxide radicals. Thus, it is possible to measure ϕ values exclusively from + and - charged compounds even for highly charged biomolecules, avoiding the use of neutral cosolutes that, as we further establish here, limits the accuracy of the measured electrostatic potentials. In addition, the smaller concentrations of cosolutes required minimize potential binding to sites on macromolecules. Fourth, the closer proximity of the paramagnetic center and charged groups within Gd chelates, in comparison to the corresponding nitroxide compounds, enables more accurate predictions of ϕ potentials for cross-validation of the experimental results. The Gd-based method described here, thus, broadens the applicability of studies of biomolecular electrostatics using solution NMR spectroscopy.

摘要

NMR 光谱学是测量生物分子静电特性的重要工具。到目前为止,生物分子溶液中氮氧化物共溶剂产生的 H 核顺磁弛豫增强(PRE)已被用于测量蛋白质和核酸的有效近表面静电势(ϕ)。在这里,我们提出了一种基于钆(Gd)的 NMR 方法,利用具有不同净电荷的 Gd 配合物来测量 ϕ 值,并通过应用于许多生物分子系统来证明其用途。与氮氧化物相比,基于 Gd 的共溶剂在 ϕ 测量方面具有几个优势。首先,与氮氧化物化合物不同,Gd 配合物能够对需要还原剂的氧化敏感蛋白进行静电势测量。其次,Gd 的电子自旋量子数较大(7/2),当与氮氧化物自由基在相同浓度下使用时,Gd 配合物的 PRE 明显更大。因此,即使对于带高电荷的生物分子,也可以仅从正负电荷化合物测量 ϕ 值,从而避免使用中性共溶剂,正如我们在这里进一步证明的那样,这会限制测量静电势的准确性。此外,所需共溶剂的浓度较小,最大限度地减少了与大分子上结合位点的潜在结合。第四,与相应的氮氧化物化合物相比,Gd 配合物中顺磁中心和带电基团的接近程度使 ϕ 电位的更准确预测成为可能,从而为实验结果的交叉验证提供了依据。因此,这里描述的基于 Gd 的方法拓宽了使用溶液 NMR 光谱学研究生物分子静电学的适用性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3c69/11295196/561f169c2820/ja4c04433_0001.jpg

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