Department of Pharmacology, University of Minnesota, 6-120 Jackson Hall, 321 Church St. SE, Minneapolis, MN, 55455, USA.
Cell Commun Signal. 2024 Jul 29;22(1):381. doi: 10.1186/s12964-024-01749-w.
Cellular retinoic acid binding protein 1 (CRABP1) mediates rapid, non-canonical activity of retinoic acid (RA) by forming signalosomes via protein-protein interactions. Two signalosomes have been identified previously: CRABP1-MAPK and CRABP1-CaMKII. Crabp1 knockout (CKO) mice exhibited altered exosome profiles, but the mechanism of CRABP1 action was unclear. This study aimed to screen for and identify novel CRABP1 signalosomes that could modulate exosome secretion by using a combinatorial approach involving biochemical, bioinformatic and molecular studies.
Immunoprecipitation coupled with mass spectrometry (IP-MS) identified candidate CRABP1-interacting proteins which were subsequently analyzed using GO Term Enrichment, Functional Annotation Clustering; and Pathway Analysis. Gene expression analysis of CKO samples revealed altered expression of genes related to exosome biogenesis and secretion. The effect of CRABP1 on exosome secretion was then experimentally validated using CKO mice and a Crabp1 knockdown P19 cell line.
IP-MS identified CRABP1-interacting targets. Bioinformatic analyses revealed significant association with actin cytoskeletal dynamics, kinases, and exosome secretion. The effect of CRABP1 on exosome secretion was experimentally validated by comparing circulating exosome numbers of CKO and wild type (WT) mice, and secreted exosomes from WT and siCRABP1-P19 cells. Pathway analysis identified kinase signaling and Arp2/3 complex as the major pathways where CRABP1-signalosomes modulate exosome secretion, which was validated in the P19 system.
The combinatorial approach allowed efficient screening for and identification of novel CRABP1-signalosomes. The results uncovered a novel function of CRABP1 in modulating exosome secretion, and suggested that CRABP1 could play roles in modulating intercellular communication and signal propagation.
细胞视黄酸结合蛋白 1(CRABP1)通过蛋白-蛋白相互作用形成信号小体,介导视黄酸(RA)的快速、非经典活性。先前已经鉴定出两种信号小体:CRABP1-MAPK 和 CRABP1-CaMKII。Crabp1 敲除(CKO)小鼠表现出外体谱的改变,但 CRABP1 作用的机制尚不清楚。本研究旨在通过生化、生物信息学和分子研究相结合的方法,筛选和鉴定新的 CRABP1 信号小体,以调节外体分泌。
免疫沉淀结合质谱(IP-MS)鉴定候选的 CRABP1 相互作用蛋白,随后使用 GO 术语富集、功能注释聚类和途径分析进行分析。CKO 样本的基因表达分析显示,与外体发生和分泌相关的基因表达发生改变。然后使用 CKO 小鼠和 Crabp1 敲低 P19 细胞系实验验证 CRABP1 对外体分泌的影响。
IP-MS 鉴定了 CRABP1 相互作用的靶标。生物信息学分析显示与肌动蛋白细胞骨架动力学、激酶和外体分泌有显著关联。通过比较 CKO 和野生型(WT)小鼠的循环外体数量以及 WT 和 siCRABP1-P19 细胞的分泌外体,实验验证了 CRABP1 对外体分泌的影响。途径分析确定了激酶信号和 Arp2/3 复合物是 CRABP1 信号小体调节外体分泌的主要途径,这在 P19 系统中得到了验证。
该组合方法可有效筛选和鉴定新的 CRABP1 信号小体。结果揭示了 CRABP1 在外体分泌调节中的新功能,并表明 CRABP1 可能在调节细胞间通讯和信号转导中发挥作用。