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在 2.2Å 分辨率下对人全长 RAD52 的综合结构研究。

An integrative structural study of the human full-length RAD52 at 2.2 Å resolution.

机构信息

Computational and Chemical Biology, Istituto Italiano di Tecnologia, Genoa, Italy.

Department of Pharmacy and Biotechnology, University of Bologna, Bologna, Italy.

出版信息

Commun Biol. 2024 Aug 8;7(1):956. doi: 10.1038/s42003-024-06644-1.

Abstract

Human RAD52 (RAD52) is a DNA-binding protein involved in many DNA repair mechanisms and genomic stability maintenance. In the last few years, this protein was discovered to be a promising novel pharmacological target for anticancer strategies. Although the interest in RAD52 has exponentially grown in the previous decade, most information about its structure and mechanism still needs to be elucidated. Here, we report the 2.2 Å resolution cryo-EM reconstruction of the full-length RAD52 (FL-RAD52) protein. This allows us to describe the hydration shell of the N-terminal region of FL-RAD52, which is structured in an undecamer ring. Water molecules coordinate with protein residues to promote stabilization inside and among the protomers and within the inner DNA binding cleft to drive protein-DNA recognition. Additionally, through a multidisciplinary approach involving SEC-SAXS and computational methods, we comprehensively describe the highly flexible and dynamic organization of the C-terminal portion of FL-RAD52. This work discloses unprecedented structural details on the FL-RAD52, which will be critical for characterizing its mechanism of action and inhibitor development, particularly in the context of novel approaches to synthetic lethality and anticancer drug discovery.

摘要

人类 RAD52(RAD52)是一种参与多种 DNA 修复机制和基因组稳定性维持的 DNA 结合蛋白。在过去的几年中,这种蛋白质被发现是一种有前途的新型抗癌策略的药理学靶标。尽管在过去十年中,人们对 RAD52 的兴趣呈指数级增长,但关于其结构和机制的大部分信息仍有待阐明。在这里,我们报告了全长 RAD52(FL-RAD52)蛋白的 2.2Å 分辨率冷冻电镜重建。这使我们能够描述 FL-RAD52 中 N 端区域的水合壳,该区域呈非十聚体环结构。水分子与蛋白质残基配位,以促进在亚基内部和之间以及在内 DNA 结合裂隙内的稳定,从而驱动蛋白质-DNA 识别。此外,通过涉及 SEC-SAXS 和计算方法的多学科方法,我们全面描述了 FL-RAD52 中 C 端部分的高度灵活和动态组织。这项工作揭示了 FL-RAD52 前所未有的结构细节,这对于表征其作用机制和抑制剂开发至关重要,特别是在合成致死和抗癌药物发现的新方法方面。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1d94/11306251/313daaeeceb1/42003_2024_6644_Fig1_HTML.jpg

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