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不同扰动和规模下活性污泥反应器的非冗余宏基因组组装基因组。

Non-redundant metagenome-assembled genomes of activated sludge reactors at different disturbances and scales.

机构信息

Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University Singapore, Singapore, 637551, Singapore.

Department of Civil and Environmental Engineering, University of California, Davis, California, 95616, USA.

出版信息

Sci Data. 2024 Aug 9;11(1):855. doi: 10.1038/s41597-024-03601-9.

Abstract

Metagenome-assembled genomes (MAGs) are microbial genomes reconstructed from metagenomic data and can be assigned to known taxa or lead to uncovering novel ones. MAGs can provide insights into how microbes interact with the environment. Here, we performed genome-resolved metagenomics on sequencing data from four studies using sequencing batch reactors at microcosm (25 mL) and mesocosm (4 L) scales inoculated with sludge from full-scale wastewater treatment plants. These studies investigated how microbial communities in such plants respond to two environmental disturbances: the presence of toxic 3-chloroaniline and changes in organic loading rate. We report 839 non-redundant MAGs with at least 50% completeness and 10% contamination (MIMAG medium-quality criteria). From these, 399 are of putative high-quality, while sixty-seven meet the MIMAG high-quality criteria. MAGs in this catalogue represent the microbial communities in sixty-eight laboratory-scale reactors used for the disturbance experiments, and in the full-scale wastewater treatment plant which provided the source sludge. This dataset can aid meta-studies aimed at understanding the responses of microbial communities to disturbances, particularly as ecosystems confront rapid environmental changes.

摘要

宏基因组组装基因组(MAGs)是通过宏基因组数据分析重建的微生物基因组,可被分配到已知的分类群中,或者发现新的分类群。MAGs 可以深入了解微生物如何与环境相互作用。在这里,我们使用测序批量反应器,在微宇宙(25ml)和中宇宙(4L)规模上,对来自四个研究的测序数据进行了基因组解析宏基因组学研究,这些研究接种了来自全规模污水处理厂的污泥。这些研究调查了这种植物中的微生物群落如何应对两种环境干扰:有毒 3-氯苯胺的存在和有机负荷率的变化。我们报告了 839 个非冗余的 MAGs,其完整性至少为 50%,污染率为 10%(MIMAG 中等质量标准)。其中,399 个是推测的高质量 MAGs,而 67 个符合 MIMAG 高质量标准。该目录中的 MAGs 代表了用于干扰实验的六十八个实验室规模反应器中的微生物群落,以及提供原始污泥的全规模污水处理厂中的微生物群落。该数据集可以帮助进行旨在理解微生物群落对干扰的响应的元研究,特别是在生态系统面临快速环境变化的情况下。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ec4/11316123/e5dcb2f8038b/41597_2024_3601_Fig1_HTML.jpg

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