Ramjas College, University of Delhi, Delhi, 110007, India.
Gargi College, University of Delhi, Delhi, 110007, India.
Arch Microbiol. 2024 Aug 14;206(9):380. doi: 10.1007/s00203-024-04105-1.
Haloalkane dehalogenase, LinB, is a member of the α/β hydrolase family of enzymes. It has a wide range of halogenated substrates, but, has been mostly studied in context of degradation of hexachlorocyclohexane (HCH) isomers, especially β-HCH (5-12% of total HCH isomers), which is the most recalcitrant and persistent among all the HCH isomers. LinB was identified to directly act on β-HCH in a one or two step transformation which decreases its toxicity manifold. Thereafter, many studies focused on LinB including its structure determination using X-ray crystallographic studies, structure comparison with other haloalkane dehalogenases, substrate specificity and kinetic studies, protein engineering and site-directed mutagenesis studies in search of better catalytic activity of the enzyme. LinB was mainly identified and characterized in bacteria belonging to sphingomonads. Detailed sequence comparison of LinB from different sphingomonads further revealed the residues critical for its activity and ability to catalyze either one or two step transformation of β-HCH. Association of LinB with IS6100 elements is also being discussed in detail in sphingomonads. In this review, we summarized vigorous efforts done by different research groups on LinB for developing better bioremediation strategies against HCH contamination. Also, kinetic studies, protein engineering and site directed mutagenesis studies discussed here forms the basis of further exploration of LinB's role as an efficient enzyme in bioremediation projects.
卤代烷脱卤酶 LinB 是 α/β 水解酶家族的成员。它具有广泛的卤代底物,但主要研究其在六氯环己烷 (HCH) 异构体降解方面的作用,特别是β-HCH(总 HCH 异构体的 5-12%),它是所有 HCH 异构体中最顽固和持久的。LinB 被确定为直接作用于β-HCH 的一步或两步转化,从而大大降低其毒性。此后,许多研究都集中在 LinB 上,包括使用 X 射线晶体学研究确定其结构,与其他卤代烷脱卤酶进行结构比较,研究底物特异性和动力学,进行蛋白质工程和定点突变研究,以寻找更好的酶催化活性。LinB 主要在属于鞘氨醇单胞菌的细菌中被鉴定和表征。来自不同鞘氨醇单胞菌的 LinB 的详细序列比较进一步揭示了其活性和催化β-HCH 一步或两步转化的能力的关键残基。IS6100 元件与 LinB 的关联也在鞘氨醇单胞菌中进行了详细讨论。在这篇综述中,我们总结了不同研究小组在 LinB 方面所做的大量努力,以开发更好的针对 HCH 污染的生物修复策略。此外,这里讨论的动力学研究、蛋白质工程和定点突变研究为进一步探索 LinB 在生物修复项目中作为一种有效酶的作用奠定了基础。