Li Yuwei, Li Xiaoxi, Wu Bihua, Su Shuangyan, Su Yunpeng, Guo Le
Department of Medical Microbiology and Immunology, School of Basic Medical Sciences, Dali University, Dali, Yunnan, China.
Department of General Surgery, School of Clinical Medicine, Dali University, Dali, Yunnan, China.
Front Mol Biosci. 2024 Aug 7;11:1424104. doi: 10.3389/fmolb.2024.1424104. eCollection 2024.
FAM110B belongs to the family that has a 110 sequence similarity (FAM110) and is located in the centrosome and mitotic spindle. FAM110B has been linked to tumor cell growth in earlier research. Uncertainty exists regarding FAM110B's function within the tumor microenvironment is unclear as well as pan-cancer. In order to assess the variation in FAM110B expression within normal and pan-cancer tissues, we combined the TCGA and GTEx databases. The cBioPortal database and the GSCALite platform were used to examine the variation in genome and methylation alteration of FAM110B. Cox regression, Kaplan-Meier, and SangerBox were employed to examine the clinical features and prognosis of FAM110B and pan-cancer. The purpose of the correlational research was to investigate the associations within immunerelated genes, tumor mutation burden, microsatellite instability, immune-related genes, and immunological checkpoints and FAM110B expression. ESTIMATE, EPIC, QUANTISEQ, and MCPCOUNTER methods were used to calculate the interaction among FAM110B expression as well as the tumor immune microenvironment. The immunoinfiltration and function of FAM110B were analyzed by single-cell databases (TISCH and CancerSEA). Finally, we evaluated the sensitivity of FAM110B to small-molecule medications through GDSC and CTRP databases. The transcription and protein expression of FAM110B varies significantly throughout cancer types, and this has predictive value for the prognosis of some tumors; including brain lower grade glioma (LGG), stomach adenocarcinoma (STAD), pancreatic adenocarcinoma (PAAD), etc. In the tumor microenvironment, the expression level of FAM110B was associated with immune cell infiltration, immune checkpoint immune regulatory genes, tumor mutational burden, and microsatellite fragility to a certain extent. This work investigates the possibility of utility of FAM110B as a marker to forecast pan-cancer immunotherapy response, providing a theoretical basis for cancer therapy.
FAM110B属于具有110序列相似性的家族(FAM110),位于中心体和有丝分裂纺锤体中。在早期研究中,FAM110B与肿瘤细胞生长有关。FAM110B在肿瘤微环境中的功能以及泛癌情况尚不清楚。为了评估FAM110B在正常组织和泛癌组织中的表达变化,我们整合了TCGA和GTEx数据库。使用cBioPortal数据库和GSCALite平台来检测FAM110B的基因组变异和甲基化改变。采用Cox回归、Kaplan-Meier法和SangerBox来研究FAM110B和泛癌的临床特征及预后。相关性研究的目的是调查免疫相关基因、肿瘤突变负担、微卫星不稳定性、免疫相关基因和免疫检查点与FAM110B表达之间的关联。使用ESTIMATE、EPIC、QUANTISEQ和MCPCOUNTER方法来计算FAM110B表达与肿瘤免疫微环境之间的相互作用。通过单细胞数据库(TISCH和CancerSEA)分析FAM110B的免疫浸润和功能。最后,我们通过GDSC和CTRP数据库评估FAM110B对小分子药物的敏感性。FAM110B的转录和蛋白质表达在不同癌症类型中差异显著,这对某些肿瘤的预后具有预测价值;包括脑低级别胶质瘤(LGG)、胃腺癌(STAD)、胰腺腺癌(PAAD)等。在肿瘤微环境中,FAM110B的表达水平在一定程度上与免疫细胞浸润、免疫检查点免疫调节基因、肿瘤突变负担和微卫星脆性相关。这项工作研究了FAM110B作为预测泛癌免疫治疗反应标志物的实用可能性,为癌症治疗提供了理论依据。