Program in Quantitative and Computational Biology, Princeton University, Princeton, New Jersey, USA.
Department of Chemical and Biological Engineering, Princeton University, Princeton, New Jersey, USA.
mBio. 2024 Oct 16;15(10):e0222924. doi: 10.1128/mbio.02229-24. Epub 2024 Sep 9.
Nitric oxide (·NO) is one of the toxic metabolites that bacteria can be exposed to within phagosomes. Gre factors, which are also known as transcript cleavage factors or transcription elongation factors, relieve back-tracked transcription elongation complexes by cleaving nascent RNAs, which allows transcription to resume after stalling. Here we discovered that loss of both Gre factors in , GreA and GreB, significantly compromised ·NO detoxification due to ·NO-induced phenotypic heterogeneity in ΔΔ populations, which did not occur in wild-type cultures. Under normal culturing conditions, both wild-type and ΔΔ synthesized transcripts uniformly, whereas treatment with ·NO led to bimodal transcript levels in ΔΔ that were unimodal in wild-type. Interestingly, exposure to another toxic metabolite of phagosomes, hydrogen peroxide (HO), produced analogous results. Furthermore, we showed that loss of Gre factors led to cheating under ·NO stress where transcriptionally deficient cells benefited from the detoxification activities of the transcriptionally proficient subpopulation. Collectively, these results show that loss of Gre factor activities produces phenotypic heterogeneity under ·NO and HO stress that can yield cheating between subpopulations.IMPORTANCEToxic metabolite stress occurs in a broad range of contexts that are important to human health, microbial ecology, and biotechnology, whereas Gre factors are highly conserved throughout the bacterial kingdom. Here we discovered that loss of Gre factors in leads to phenotypic heterogeneity under ·NO and HO stress, which we further show with ·NO results in cheating between subpopulations. Collectively, these data suggest that Gre factors play a role in coping with toxic metabolite stress, and that loss of Gre factors can produce cheating between neighbors.
一氧化氮(·NO)是细菌在吞噬体中可能接触到的有毒代谢物之一。Gre 因子也称为转录切割因子或转录延伸因子,通过切割新生 RNA 来使受阻的转录延伸复合物恢复,从而允许在停滞之后重新开始转录。在这里,我们发现,Gre 因子(GreA 和 GreB)的缺失显著削弱了·NO 的解毒作用,因为·NO 诱导的 ΔΔ 群体表型异质性,而在野生型培养物中则不会发生这种情况。在正常培养条件下,野生型和 ΔΔ 均均匀合成转录本,而用·NO 处理会导致 ΔΔ 中的转录本水平呈双峰,而在野生型中则呈单峰。有趣的是,暴露于吞噬体的另一种有毒代谢物过氧化氢(HO)也产生了类似的结果。此外,我们表明,Gre 因子的缺失导致了在·NO 应激下的欺骗行为,其中转录缺陷细胞受益于转录能力较强的亚群的解毒活性。总之,这些结果表明,Gre 因子活性的丧失会在·NO 和 HO 应激下产生表型异质性,从而导致亚群之间的欺骗行为。
有毒代谢物应激发生在广泛的与人类健康、微生物生态学和生物技术相关的背景下,而 Gre 因子在整个细菌界中高度保守。在这里,我们发现,Gre 因子的缺失会导致·NO 和 HO 应激下的表型异质性,我们进一步用·NO 结果表明,亚群之间存在欺骗行为。总的来说,这些数据表明,Gre 因子在应对有毒代谢物应激方面发挥作用,并且 Gre 因子的缺失会导致邻居之间的欺骗行为。