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构建用于预测前列腺癌生化复发的铜死亡相关长链非编码RNA特征。

Construction of a cuproptosis‑related lncRNA signature to predict biochemical recurrence of prostate cancer.

作者信息

Yu Zhaojun, Deng Huanhuan, Chao Haichao, Song Zhen, Zeng Tao

机构信息

Urology Department, The Second Affiliated Hospital of Nanchang University, Nanchang, Jiangxi 330006, P.R. China.

出版信息

Oncol Lett. 2024 Sep 3;28(5):526. doi: 10.3892/ol.2024.14659. eCollection 2024 Nov.

Abstract

Biochemical recurrence (BCR) is common in prostate cancer (PCa), and patients with BCR usually have a poor prognosis. Cuproptosis is a unique type of cell death, and copper homeostasis is crucial to the occurrence and development of malignancies. The present study aimed to explore the prognostic value of cuproptosis-related long non-coding RNAs (lncRNAs; CRLs) in PCa and to develop a predictive signature for forecasting BCR in patients with PCa. Using The Cancer Genome Atlas database, transcriptomic, mutation and clinical data were collected from patients with PCa. A total of 121 CRLs were identified using Pearson's correlation coefficient. Subsequently, a 6-CRL signature consisting of AC087276.2, CNNM3-DT, AC090198.1, AC138207.5, METTL14-DT and LINC01515 was created to predict the BCR of patients with PCa through Cox and least absolute shrinkage and selection operator regression analyses. Kaplan-Meier curve analysis demonstrated that high-risk patients had a low BCR-free survival rate. In addition, there was a substantial difference between the high- and low-risk groups in the immune microenvironment, immune therapy, drug sensitivity and tumor mutational burden. A nomogram integrating the Gleason score, 6-CRL signature and clinical T-stage was established and evaluated. Finally, the expression of signature lncRNAs in PCa cells was verified through reverse transcription-quantitative PCR. In conclusion, the 6-CRL signature may be a potential tool for making predictions regarding BCR in patients with PCa, and the prognostic nomogram may be considered a practical tool for clinical decision-making.

摘要

生化复发(BCR)在前列腺癌(PCa)中很常见,BCR患者的预后通常较差。铜死亡是一种独特的细胞死亡类型,铜稳态对恶性肿瘤的发生和发展至关重要。本研究旨在探讨铜死亡相关长链非编码RNA(lncRNAs;CRLs)在PCa中的预后价值,并建立一个预测模型来预测PCa患者的BCR。利用癌症基因组图谱数据库,收集了PCa患者的转录组、突变和临床数据。使用Pearson相关系数共鉴定出121个CRLs。随后,通过Cox回归和最小绝对收缩和选择算子回归分析,创建了一个由AC087276.2、CNNM3-DT、AC090198.1、AC138207.5、METTL14-DT和LINC01515组成的6-CRLs特征模型,以预测PCa患者的BCR。Kaplan-Meier曲线分析表明,高危患者的无BCR生存率较低。此外,高危组和低危组在免疫微环境、免疫治疗、药物敏感性和肿瘤突变负担方面存在显著差异。建立并评估了一个整合Gleason评分、6-CRLs特征模型和临床T分期的列线图。最后,通过逆转录定量PCR验证了PCa细胞中特征性lncRNAs的表达。总之,6-CRLs特征模型可能是预测PCa患者BCR的潜在工具,而预后列线图可被视为临床决策的实用工具。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/53df/11391508/7ab8c1d34fa6/ol-28-05-14659-g00.jpg

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