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基于深入的网络药理学和分子对接研究槲皮素改善复发性自然流产的新分子机制

New molecular mechanisms of quercetin in improving recurrent spontaneous abortion based on in-depth network pharmacology and molecular docking.

作者信息

Wang Dan, Li Xuebing, Li Yifan, Wang Ruilin, Wang Chunxia, Li Yongwei

机构信息

The Second Clinical Medical College of Henan University of Chinese Medicine, Zhengzhou, China.

Henan Province Hospital of Traditional Chinese Medicine, The Second Affiliated Hospital of Henan University of Chinese Medicine, Zhengzhou, China.

出版信息

Front Chem. 2024 Sep 4;12:1407667. doi: 10.3389/fchem.2024.1407667. eCollection 2024.

Abstract

INTRODUCTION

The increasing prevalence of recurrent spontaneous abortion (RSA) poses significant physical and psychological challenges for affected individuals. Quercetin, a natural plant flavonoid, shows promise in reducing miscarriage rates, yet its precise mechanism remains elusive. This study uses network pharmacology, molecular docking, and experimental validation to explore the molecular pathways through which quercetin mitigates RSA.

METHODS

Quercetin-related target genes were sourced from the Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform (TCMSP), and RSA target genes were retrieved from the Comparative Toxicogenomics Database (CTD), with overlapping targets identified using Venn diagrams. All genes were visualized using the STRING database, and core targets were selected with Cytoscape 3.7.3. Gene ontology and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were conducted using the DAVID and Reactome online resources. Subsequently, HTR-8/SVneo cells were stimulated with lipopolysaccharide (LPS) and treated with varying concentrations of quercetin (1, 5, and 10 μM), then subjected to CCK-8, wound healing, transwell, and annexin V-FITC/PI apoptosis assays. Reverse-transcription quantitative PCR was used to determine the mRNA expression levels of IL-1β, TNF-α, and IL-6 in LPS-induced cells post-quercetin intervention, and western blotting was used to measure AKT1, MMP9, and caspase-3 protein levels.

RESULTS

A total of 139 quercetin-associated target genes were identified from the TCMSP database, and 98 disease-associated target genes were obtained from the CTD, resulting in 25 shared target genes. Gene ontology enrichment highlighted the involvement of these targets in positive regulation of apoptosis, response to hypoxia, and intrinsic apoptotic signaling pathway in response to DNA damage. KEGG pathway analysis indicated enrichment in pathways related to interleukin-4 and interleukin-13 signaling, cytokine signaling in the immune system, and apoptosis. Molecular docking studies revealed robust binding of quercetin with MMP9, AKT1, IL-1β, TNF, and caspase-3. experiments demonstrated that quercetin enhanced LPS-induced cell activity, fostering proliferation, migration, and invasion, and reducing apoptosis. Moreover, quercetin reduced IL-1β, TNF-α, and IL-6 mRNA expression, increased AKT1 and MMP9 protein levels, and reduced caspase-3 expression.

CONCLUSION

Quercetin could mitigate the incidence of RSA by modulating inflammatory responses and apoptotic processes, through upregulation of AKT1 and MMP9, and downregulation of caspase-3, IL-1β, TNF-α, and IL-6. Quercetin opens up a new way of thinking about treating RSA.

摘要

引言

复发性自然流产(RSA)患病率的不断上升给受影响的个体带来了重大的身体和心理挑战。槲皮素是一种天然植物黄酮类化合物,在降低流产率方面显示出前景,但其确切机制仍不清楚。本研究采用网络药理学、分子对接和实验验证来探索槲皮素减轻RSA的分子途径。

方法

与槲皮素相关的靶基因来源于中药系统药理学数据库与分析平台(TCMSP),RSA靶基因从比较毒理基因组学数据库(CTD)中检索,使用韦恩图确定重叠靶标。所有基因使用STRING数据库进行可视化,并使用Cytoscape 3.7.3选择核心靶标。使用DAVID和Reactome在线资源进行基因本体论和京都基因与基因组百科全书(KEGG)通路富集分析。随后,用脂多糖(LPS)刺激HTR-8/SVneo细胞,并用不同浓度的槲皮素(1、5和10μM)处理,然后进行CCK-8、伤口愈合、Transwell和膜联蛋白V-FITC/PI凋亡检测。逆转录定量PCR用于测定槲皮素干预后LPS诱导细胞中IL-1β、TNF-α和IL-6的mRNA表达水平,蛋白质印迹法用于检测AKT1、MMP9和caspase-3的蛋白水平。

结果

从TCMSP数据库中鉴定出总共139个与槲皮素相关的靶基因,从CTD中获得98个疾病相关靶基因,从而得到25个共享靶基因。基因本体论富集突出了这些靶标参与细胞凋亡的正调控、对缺氧的反应以及对DNA损伤的内在凋亡信号通路。KEGG通路分析表明,与白细胞介素-4和白细胞介素-13信号传导、免疫系统中的细胞因子信号传导以及细胞凋亡相关的通路富集。分子对接研究表明槲皮素与MMP9、AKT1、IL-1β、TNF和caspase-3有强结合。实验表明,槲皮素增强了LPS诱导的细胞活性,促进了增殖、迁移和侵袭,并减少了细胞凋亡。此外,槲皮素降低了IL-1β、TNF-α和IL-6的mRNA表达,增加了AKT1和MMP9的蛋白水平,并降低了caspase-3的表达。

结论

槲皮素可通过调节炎症反应和凋亡过程,上调AKT1和MMP9以及下调caspase-3、IL-1β、TNF-α和IL-6来减轻RSA的发生率。槲皮素为治疗RSA开辟了新的思路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6d35/11408355/d41178accd67/fchem-12-1407667-g001.jpg

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