Zhao Mengru, Guo Baoyuan, Jiang Shuzhen, Wang Yang
School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China.
Institute of Grain and Oil Quality and Safety, Academy of National Food and Strategic Reserves Administration, Beijing 100834, China.
Data Brief. 2024 Sep 4;57:110911. doi: 10.1016/j.dib.2024.110911. eCollection 2024 Dec.
PYN10_6_2, a lactic acid bacterial strain previously isolated from larval feces, possesses the ability to convert zearalenone (ZEN) to α-/β-Zearalenol (α-/β-ZEL). However, the genes involved in the ZEN reduction reaction and the biosafety of this strain remain unknown. In this study, we sequenced, assembled, and annotated the whole genome of PYN10_6_2. Genomic sequencing was conducted using short-read sequencing on the Illumina HiSeq X Ten platform and long-read sequencing on the PacBio RS II Single Molecule Real-Time (SMRT) platform. The assembled genome consisted of one circular chromosome, four circular plasmids, with a total size of 2,745,725 bp and a G + C content of 45.52 %. Annotation identified 2,660 coding sequences, 5 rRNAs, 66 tRNAs, and a single CRISPR locus. Average nucleotide identity (ANI) between PYN10_6_2 and DSM 20054 yielded a value of 98.94 %. Further in-depth analysis revealed 182 antibiotic resistance genes, 237 putative virulence genes, 2 prophages, and 10 genomic islands. Additionally, functional annotation through COG and KEGG databases revealed the presence of three genes encoding 3α- and 3β-hydroxysteroid dehydrogenase (3α-/3β-HSD) within the bacterial chromosome. This comprehensive genomic characterization provides valuable insights into the genetic basis of PYN10_6_2's ZEN-reducing ability and its biosafety profile.
PYN10_6_2是一株先前从幼虫粪便中分离出的乳酸菌菌株,具有将玉米赤霉烯酮(ZEN)转化为α-/β-玉米赤霉醇(α-/β-ZEL)的能力。然而,参与ZEN还原反应的基因以及该菌株的生物安全性仍不清楚。在本研究中,我们对PYN10_6_2的全基因组进行了测序、组装和注释。基因组测序使用Illumina HiSeq X Ten平台的短读长测序和PacBio RS II单分子实时(SMRT)平台的长读长测序。组装后的基因组由一条环状染色体和四个环状质粒组成,总大小为2,745,725 bp,G + C含量为45.52%。注释鉴定出2,660个编码序列、5个rRNA、66个tRNA和一个单一的CRISPR位点。PYN10_6_2与DSM 20054之间的平均核苷酸同一性(ANI)值为98.94%。进一步深入分析发现了182个抗生素抗性基因、237个假定的毒力基因、2个原噬菌体和10个基因组岛。此外,通过COG和KEGG数据库进行的功能注释显示,在细菌染色体中存在三个编码3α-和3β-羟基类固醇脱氢酶(3α-/3β-HSD)的基因。这种全面的基因组特征为PYN10_6_2的ZEN还原能力及其生物安全性概况的遗传基础提供了有价值的见解。