Institute of Biology, Federal University of Rio de Janeiro, Rio de Janeiro, Brazil.
Oswaldo Cruz Institute (IOC), Oswaldo Cruz Foundation (Fiocruz), Rio de Janeiro, Brazil.
Curr Microbiol. 2024 Oct 2;81(11):384. doi: 10.1007/s00284-024-03905-4.
A novel bacterial isolate A520 (A520 = CBAS 737 = CAIM 1944) was obtained from the skin of bandtail puffer fish Sphoeroides spengleri (Tetraodontidae Family), collected in Arraial do Cabo (Rio de Janeiro, Brazil). A520 is Gram-stain-negative, flagellated and aerobic bacteria. Optimum growth occurs at 25-30 °C in the presence of 3% NaCl. The genome sequence of the novel isolate consisted of 4.5 Mb (4082 coding genes and G+C content of 41.1%). The closest phylogenetic neighbor was Pseudoalteromonas shioyasakiensis JCM 18891 (97.9% 16S rRNA sequence similarity, 94.8% Average Amino Acid Identity, 93% Average Nucleotide Identity and 51.8% similarity in Genome-to-Genome-Distance). Several in silico phenotypic features are useful to differentiate A520 from its closest phylogenetic neighbors, including trehalose, D-mannose, cellobiose, pyrrolidonyl-beta-naphthylamide, starch hydrolysis, D-xylose, lactose, tartrate utilization, sucrose, citrate, glycerol, mucate and acetate utilization, malonate, glucose oxidizer, gas from glucose, nitrite to gas, L-rhamnose, ornithine decarboxylase, lysine decarboxylase and yellow pigment. The genome of the novel species contains 3 gene clusters (~ 66.81 Kbp in total) coding for different types of bioactive compounds that could indicate ecological roles pertaining to the bandtail puffer fish host. Based on genome-based taxonomic approach, strain A520 (A520 = CBAS 737 = CAIM 1944) is proposed as a new species, Pseudoalteromonas simplex sp. nov.
一种新型细菌分离株 A520(A520 = CBAS 737 = CAIM 1944)是从 bandtail 河豚鱼 Sphoeroides spengleri(Tetraodontidae 科)的皮肤中获得的,该鱼采集于巴西里约热内卢的 Arraial do Cabo。A520 是革兰氏阴性、有鞭毛和需氧细菌。在 25-30°C 下、有 3%NaCl 存在时,其生长最佳。新型分离株的基因组序列由 4.5 Mb(4082 个编码基因和 G+C 含量为 41.1%)组成。最接近的系统发育近邻是 Pseudoalteromonas shioyasakiensis JCM 18891(16S rRNA 序列相似性为 97.9%,平均氨基酸同一性为 94.8%,平均核苷酸同一性为 93%,基因组到基因组距离相似度为 51.8%)。一些计算机预测的表型特征有助于将 A520 与其最接近的系统发育近邻区分开来,包括海藻糖、D-甘露糖、纤维二糖、吡咯烷酮-β-萘酰胺、淀粉水解、D-木糖、乳糖、延胡索酸盐利用、蔗糖、柠檬酸盐、甘油、粘酸盐和醋酸盐利用、丙二酸盐、葡萄糖氧化酶、葡萄糖产生气体、亚硝酸盐产生气体、L-鼠李糖、鸟氨酸脱羧酶、赖氨酸脱羧酶和黄色素。新型物种的基因组包含 3 个基因簇(总共有~66.81 Kbp),编码不同类型的生物活性化合物,这些化合物可能表明与 bandtail 河豚鱼宿主有关的生态作用。基于基于基因组的分类方法,菌株 A520(A520 = CBAS 737 = CAIM 1944)被提议为一种新物种,即 Pseudoalteromonas simplex sp. nov.。