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从带纹东方鲀(Sphoeroides spengleri)的皮肤中分离到的简单假交替单胞菌(Pseudoalteromonas simplex sp. nov.)。

Pseudoalteromonas simplex sp. nov. Isolated from the Skin of Bandtail Puffer Fish (Sphoeroides spengleri).

机构信息

Institute of Biology, Federal University of Rio de Janeiro, Rio de Janeiro, Brazil.

Oswaldo Cruz Institute (IOC), Oswaldo Cruz Foundation (Fiocruz), Rio de Janeiro, Brazil.

出版信息

Curr Microbiol. 2024 Oct 2;81(11):384. doi: 10.1007/s00284-024-03905-4.

Abstract

A novel bacterial isolate A520 (A520 = CBAS 737 = CAIM 1944) was obtained from the skin of bandtail puffer fish Sphoeroides spengleri (Tetraodontidae Family), collected in Arraial do Cabo (Rio de Janeiro, Brazil). A520 is Gram-stain-negative, flagellated and aerobic bacteria. Optimum growth occurs at 25-30 °C in the presence of 3% NaCl. The genome sequence of the novel isolate consisted of 4.5 Mb (4082 coding genes and G+C content of 41.1%). The closest phylogenetic neighbor was Pseudoalteromonas shioyasakiensis JCM 18891 (97.9% 16S rRNA sequence similarity, 94.8% Average Amino Acid Identity, 93% Average Nucleotide Identity and 51.8% similarity in Genome-to-Genome-Distance). Several in silico phenotypic features are useful to differentiate A520 from its closest phylogenetic neighbors, including trehalose, D-mannose, cellobiose, pyrrolidonyl-beta-naphthylamide, starch hydrolysis, D-xylose, lactose, tartrate utilization, sucrose, citrate, glycerol, mucate and acetate utilization, malonate, glucose oxidizer, gas from glucose, nitrite to gas, L-rhamnose, ornithine decarboxylase, lysine decarboxylase and yellow pigment. The genome of the novel species contains 3 gene clusters (~ 66.81 Kbp in total) coding for different types of bioactive compounds that could indicate ecological roles pertaining to the bandtail puffer fish host. Based on genome-based taxonomic approach, strain A520 (A520 = CBAS 737 = CAIM 1944) is proposed as a new species, Pseudoalteromonas simplex sp. nov.

摘要

一种新型细菌分离株 A520(A520 = CBAS 737 = CAIM 1944)是从 bandtail 河豚鱼 Sphoeroides spengleri(Tetraodontidae 科)的皮肤中获得的,该鱼采集于巴西里约热内卢的 Arraial do Cabo。A520 是革兰氏阴性、有鞭毛和需氧细菌。在 25-30°C 下、有 3%NaCl 存在时,其生长最佳。新型分离株的基因组序列由 4.5 Mb(4082 个编码基因和 G+C 含量为 41.1%)组成。最接近的系统发育近邻是 Pseudoalteromonas shioyasakiensis JCM 18891(16S rRNA 序列相似性为 97.9%,平均氨基酸同一性为 94.8%,平均核苷酸同一性为 93%,基因组到基因组距离相似度为 51.8%)。一些计算机预测的表型特征有助于将 A520 与其最接近的系统发育近邻区分开来,包括海藻糖、D-甘露糖、纤维二糖、吡咯烷酮-β-萘酰胺、淀粉水解、D-木糖、乳糖、延胡索酸盐利用、蔗糖、柠檬酸盐、甘油、粘酸盐和醋酸盐利用、丙二酸盐、葡萄糖氧化酶、葡萄糖产生气体、亚硝酸盐产生气体、L-鼠李糖、鸟氨酸脱羧酶、赖氨酸脱羧酶和黄色素。新型物种的基因组包含 3 个基因簇(总共有~66.81 Kbp),编码不同类型的生物活性化合物,这些化合物可能表明与 bandtail 河豚鱼宿主有关的生态作用。基于基于基因组的分类方法,菌株 A520(A520 = CBAS 737 = CAIM 1944)被提议为一种新物种,即 Pseudoalteromonas simplex sp. nov.。

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