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揭示植物化学物质在自闭症谱系障碍中的作用:运用网络药理学和分子动力学模拟。

Unveiling the role of phytochemicals in autism spectrum disorder by employing network pharmacology and molecular dynamics simulation.

机构信息

Biochemistry and Molecular Biology Laboratory, Department of Zoology, Faculty of Science, University of Delhi, Delhi, 110007, India.

Department of Computational Biology, Indraprastha Institute of Information Technology, Okhla Industrial Estate, Delhi, 110020, India.

出版信息

Metab Brain Dis. 2024 Nov 21;40(1):34. doi: 10.1007/s11011-024-01467-9.

Abstract

Autism Spectrum Disorder (ASD) comprises a myriad of disorders with vast pathologies, aetiologies, and involvement of genetic and environmental risk factors. Given the polygenic aspect of ASD, targeting several genes/proteins responsible for pathogenesis at once might prove advantageous in its remediation. Various phytochemicals have been proven to possess neuroprotective, anti-inflammatory, and antioxidant properties by alleviating symptoms and targeting a complex network of genes/proteins related to disease pathology. However, the effects of many of these phytochemicals on ASD are enigmatic, and their molecular targets and molecular mechanisms are still elusive. Here, we provide a comprehensive comparative study on the therapeutic potential of 6 phytochemicals viz. Cannabidiol, Crocetin, Epigallocatechin-3-gallate, Fisetin, Quercetin, and Resveratrol based on their neuroprotective properties in managing ASD. We aimed to identify and target a network of core proteins in the pathology of ASD via phytochemicals using network pharmacology, molecular docking, and simulation studies. The methodology includes screening genes/proteins implicated in ASD as targets of each phytochemical, followed by network construction using Protein-Protein Interactions, Gene Ontology, and enrichment analysis. The constructed network was further narrowed down to the hub genes in the network, followed by their spatio-temporal analysis, molecular docking, and molecular dynamics simulation. 6 core genes were obtained for ASD, 3 of which are directly involved in disease pathogenesis. The study provides a set of novel genes that phytochemicals can target to ameliorate and regulate ASD pathogenesis. Cannabidiol can inhibit ABCG2, MAOB, and PDE4B, Resveratrol can target ABCB1, and Quercetin can regulate AKR1C4 and XDH. This study demonstrated the potential of phytochemicals to target and regulate ABCG2, ABCB1, AKR1C4, MAOB, PDE4B, and XDH, which in turn modulate the dysfunctional network present in the ASD pathology and provide therapeutic potential in the management of ASD.

摘要

自闭症谱系障碍(ASD)包含多种疾病,具有广泛的病理学、病因学,并涉及遗传和环境风险因素。鉴于 ASD 的多基因性质,一次针对负责发病机制的几个基因/蛋白可能在其修复中具有优势。各种植物化学物质已被证明具有神经保护、抗炎和抗氧化特性,可通过缓解症状和针对与疾病病理学相关的复杂基因/蛋白网络来发挥作用。然而,许多这些植物化学物质对 ASD 的影响仍不清楚,其分子靶标和分子机制仍难以捉摸。在这里,我们对 6 种植物化学物质的治疗潜力进行了全面的比较研究,即大麻二酚、西红花酸、表没食子儿茶素-3-没食子酸酯、漆黄素、槲皮素和白藜芦醇,它们基于它们在管理 ASD 中的神经保护特性。我们旨在通过网络药理学、分子对接和模拟研究,使用植物化学物质在 ASD 病理中识别和靶向核心蛋白网络。该方法包括筛选与 ASD 相关的基因/蛋白作为每种植物化学物质的靶点,然后使用蛋白质-蛋白质相互作用、基因本体论和富集分析构建网络。构建的网络进一步缩小到网络中的枢纽基因,然后进行时空分析、分子对接和分子动力学模拟。获得了 6 个与 ASD 相关的核心基因,其中 3 个直接参与疾病发病机制。该研究为植物化学物质提供了一组可用于改善和调节 ASD 发病机制的新基因。大麻二酚可以抑制 ABCG2、MAOB 和 PDE4B,白藜芦醇可以靶向 ABCB1,槲皮素可以调节 AKR1C4 和 XDH。该研究表明植物化学物质具有靶向和调节 ABCG2、ABCB1、AKR1C4、MAOB、PDE4B 和 XDH 的潜力,从而调节 ASD 病理学中存在的功能失调网络,并为 ASD 的管理提供治疗潜力。

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