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在β-5-连接的芳香二聚体脱氢松柏醇上生长的RB-TnSeq条形码丰度数据集。

RB-TnSeq barcode abundance data sets for grown on the β-5-linked aromatic dimer dehydrodiconiferyl alcohol.

作者信息

Metz Fletcher, Allemann Marco N, Michener Joshua K, Myers Kevin S, Lu Fachuang, Noguera Daniel R, Donohue Timothy J

机构信息

DOE Great Lakes Bioenergy Research Center, University of Wisconsin, Madison, Wisconsin, USA.

Wisconsin Energy Institute, University of Wisconsin, Madison, Wisconsin, USA.

出版信息

Microbiol Resour Announc. 2025 Jan 16;14(1):e0084424. doi: 10.1128/mra.00844-24. Epub 2024 Dec 12.

DOI:10.1128/mra.00844-24
PMID:39665553
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11737130/
Abstract

A randomly barcoded transposon insertion sequencing (RB-TnSeq) library of DSM12444 was grown in media containing either glucose or the β-5-linked aromatic dimer dehydrodiconiferyl alcohol (DC-A) as the sole carbon source. The cultures were grown to saturation and then sequenced, yielding the barcode abundance data sets presented here.

摘要

DSM12444的随机条形码转座子插入测序(RB-TnSeq)文库在含有葡萄糖或β-5-连接的芳香二聚体脱氢松柏醇(DC-A)作为唯一碳源的培养基中培养。培养物生长至饱和后进行测序,得到此处呈现的条形码丰度数据集。

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本文引用的文献

1
Catabolism of β-5 linked aromatics by .β-5 键连接芳香族化合物的分解代谢由.
mBio. 2024 Aug 14;15(8):e0171824. doi: 10.1128/mbio.01718-24. Epub 2024 Jul 16.
2
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Appl Environ Microbiol. 2024 Jan 24;90(1):e0166023. doi: 10.1128/aem.01660-23. Epub 2023 Dec 20.
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Catabolic System of 5-Formylferulic Acid, a Downstream Metabolite of a β-5-Type Lignin-Derived Dimer, in SYK-6.5-甲酰基阿魏酸的分解代谢系统,一种β-5型木质素衍生二聚体的下游代谢产物,在SYK-6中。
J Agric Food Chem. 2023 Dec 13;71(49):19663-19671. doi: 10.1021/acs.jafc.3c06128. Epub 2023 Dec 1.
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The essential Rhodobacter sphaeroides CenKR two-component system regulates cell division and envelope biosynthesis.必需的球形红杆菌 CenKR 双组分系统调节细胞分裂和包膜生物合成。
PLoS Genet. 2022 Jun 29;18(6):e1010270. doi: 10.1371/journal.pgen.1010270. eCollection 2022 Jun.
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Pathway discovery and engineering for cleavage of a β-1 lignin-derived biaryl compound.β-1 木质素衍生联苯化合物断裂的途径发现与工程改造。
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Rapid, Parallel Identification of Catabolism Pathways of Lignin-Derived Aromatic Compounds in Novosphingobium aromaticivorans.快速、平行鉴定新型芳香杆菌中木质素衍生芳香化合物的分解代谢途径。
Appl Environ Microbiol. 2018 Oct 30;84(22). doi: 10.1128/AEM.01185-18. Print 2018 Nov 15.
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Environ Microbiol. 2018 May;20(5):1739-1750. doi: 10.1111/1462-2920.14099. Epub 2018 Mar 26.
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