Suppr超能文献

一种系统筛选测定法鉴定出用于CRISPR激活的高效小向导RNA。

A systematic screening assay identifies efficient small guide RNAs for CRISPR activation.

作者信息

Arvidsson Elin, Lobo Diana Duarte, Sabarese Ermelinda, Duarte Fabio, Nobre Rui Jorge, Quintino Luis, Lundberg Cecilia

机构信息

CNS Gene Therapy, Department of Experimental Medical Sciences, Lund University, Lund, Sweden.

CNC - Center for Neuroscience and Cell Biology of Coimbra, University of Coimbra, Coimbra, Portugal.

出版信息

Front Bioeng Biotechnol. 2025 Jan 23;13:1336313. doi: 10.3389/fbioe.2025.1336313. eCollection 2025.

Abstract

CRISPR-mediated gene activation (CRISPRa) encompasses a growing field of biotechnological approaches with exciting implications for gene therapy. However, there is a lack of experimental validation tools for selecting efficient sgRNAs for downstream applications. Here, we present a screening assay capable of identifying efficient single- and double sgRNAs through fluorescence quantification . In addition, we provide a tailored Golden Gate cloning workflow for streamlined incorporation of selected sgRNA candidates into lentiviral (LVs) or adeno-associated viral vectors (AAVs). The overall workflow was validated using therapeutically relevant genes for neurodegenerative diseases, including , , and . The most efficient sgRNAs also demonstrated activation of endogenous gene expression at mRNA level. Correlation analysis of gene activation relative to sgRNA binding site distance to transcription start-site or nearby transcription factor binding sites failed to detect common characteristics influencing gene activation in the selected promoter regions. This data demonstrates the potential of the screening assay to identify functionally efficient sgRNA candidates across multiple genes along with streamlined cloning of viral vectors and may assist in accelerating future developments of CRISPRa-focused applications.

摘要

CRISPR介导的基因激活(CRISPRa)涵盖了一个不断发展的生物技术方法领域,对基因治疗具有令人兴奋的意义。然而,缺乏用于为下游应用选择高效sgRNA的实验验证工具。在此,我们展示了一种能够通过荧光定量鉴定高效单sgRNA和双sgRNA的筛选测定法。此外,我们提供了一种定制的金门克隆工作流程,用于将选定的sgRNA候选物简化整合到慢病毒(LVs)或腺相关病毒载体(AAVs)中。使用与神经退行性疾病治疗相关的基因,包括 、 和 ,对整个工作流程进行了验证。最有效的sgRNAs还在mRNA水平上证明了内源性基因表达的激活。相对于sgRNA结合位点到转录起始位点或附近转录因子结合位点的距离进行基因激活的相关性分析,未能检测到影响所选启动子区域中基因激活的共同特征。该数据证明了筛选测定法在跨多个基因鉴定功能高效的sgRNA候选物以及简化病毒载体克隆方面的潜力,并可能有助于加速未来以CRISPRa为重点的应用开发。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8ab3/11799263/cc8fe879da2f/fbioe-13-1336313-g001.jpg

相似文献

1
A systematic screening assay identifies efficient small guide RNAs for CRISPR activation.
Front Bioeng Biotechnol. 2025 Jan 23;13:1336313. doi: 10.3389/fbioe.2025.1336313. eCollection 2025.
3
Bidirectional manipulation of gene expression in adipocytes using CRISPRa and siRNA.
Mol Metab. 2017 Oct;6(10):1313-1320. doi: 10.1016/j.molmet.2017.07.001. Epub 2017 Jul 8.
5
Tailoring the CRISPR system to transactivate coagulation gene promoters in normal and mutated contexts.
Biochim Biophys Acta Gene Regul Mech. 2019 Jun;1862(6):619-624. doi: 10.1016/j.bbagrm.2019.04.002. Epub 2019 Apr 18.
6
CRISPR-mediated transcriptional activation with synthetic guide RNA.
J Biotechnol. 2020 Aug 10;319:25-35. doi: 10.1016/j.jbiotec.2020.05.005. Epub 2020 May 27.
8
Enhanced Efficiency of flySAM by Optimization of sgRNA Parameters in .
G3 (Bethesda). 2020 Dec 3;10(12):4483-4488. doi: 10.1534/g3.120.401614.
9
Direct cardiac reprogramming via combined CRISPRa-mediated endogenous Gata4 activation and exogenous Mef2c and Tbx5 expression.
Mol Ther Nucleic Acids. 2024 Nov 15;35(4):102390. doi: 10.1016/j.omtn.2024.102390. eCollection 2024 Dec 10.
10
sgRNA Sequence Motifs Blocking Efficient CRISPR/Cas9-Mediated Gene Editing.
Cell Rep. 2019 Jan 29;26(5):1098-1103.e3. doi: 10.1016/j.celrep.2019.01.024.

本文引用的文献

2
: Predicting sgRNA activity for CRISPR-mediated epigenome editing by deep learning.
Comput Struct Biotechnol J. 2022 Nov 19;21:202-211. doi: 10.1016/j.csbj.2022.11.034. eCollection 2023.
3
A User's Guide to Golden Gate Cloning Methods and Standards.
ACS Synth Biol. 2022 Nov 18;11(11):3551-3563. doi: 10.1021/acssynbio.2c00355. Epub 2022 Nov 2.
4
Parkinson's disease motor symptoms rescue by CRISPRa-reprogramming astrocytes into GABAergic neurons.
EMBO Mol Med. 2022 May 9;14(5):e14797. doi: 10.15252/emmm.202114797. Epub 2022 Apr 4.
5
CRISPR in cancer biology and therapy.
Nat Rev Cancer. 2022 May;22(5):259-279. doi: 10.1038/s41568-022-00441-w. Epub 2022 Feb 22.
7
Neuronal Cell-type Engineering by Transcriptional Activation.
Front Genome Ed. 2021 Sep 1;3:715697. doi: 10.3389/fgeed.2021.715697. eCollection 2021.
8
Rational gRNA design based on transcription factor binding data.
Synth Biol (Oxf). 2021 Jul 27;6(1):ysab014. doi: 10.1093/synbio/ysab014. eCollection 2021.
9
Engineered miniature CRISPR-Cas system for mammalian genome regulation and editing.
Mol Cell. 2021 Oct 21;81(20):4333-4345.e4. doi: 10.1016/j.molcel.2021.08.008. Epub 2021 Sep 3.
10
Efficacy, accumulation, and transcriptional profile of anti-HIV shRNAs expressed from human U6, 7SK, and H1 promoters.
Mol Ther Nucleic Acids. 2021 Jan 1;23:1020-1034. doi: 10.1016/j.omtn.2020.12.022. eCollection 2021 Mar 5.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验