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基因组学和转录组学方法推动神经退行性疾病的诊断与预后研究。

Genomic and Transcriptomic Approaches Advance the Diagnosis and Prognosis of Neurodegenerative Diseases.

作者信息

Liu Zheng, Song Si-Yuan

机构信息

Pathology Department, University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.

Department of Neuroscience, Baylor College of Medicine, Houston, TX 77030, USA.

出版信息

Genes (Basel). 2025 Jan 24;16(2):135. doi: 10.3390/genes16020135.

Abstract

Neurodegenerative diseases, such as Alzheimer's disease (AD), Parkinson's disease (PD), Huntington's disease (HD), and amyotrophic lateral sclerosis (ALS), represent a growing societal challenge due to their irreversible progression and significant impact on patients, caregivers, and healthcare systems. Despite advances in clinical and imaging-based diagnostics, these diseases are often detected at advanced stages, limiting the effectiveness of therapeutic interventions. Recent breakthroughs in genomic and transcriptomic technologies, including whole-genome sequencing, single-cell RNA sequencing (scRNA-seq), and CRISPR-based screens, have revolutionized the field, offering new avenues for early diagnosis and personalized prognosis. Genomic approaches have elucidated disease-specific genetic risk factors and molecular pathways, while transcriptomic studies have identified stage-specific biomarkers that correlate with disease progression and severity. Furthermore, genome-wide association studies (GWAS), polygenic risk scores (PRS), and spatial transcriptomics are enabling the stratification of patients based on their risk profiles and prognostic trajectories. Advances in functional genomics have uncovered actionable targets, such as ATXN2 in ALS and TREM2 in AD, paving the way for tailored therapeutic strategies. Despite these achievements, challenges remain in translating genomic discoveries into clinical practice due to disease heterogeneity and the complexity of neurodegenerative pathophysiology. Future integration of genetic technologies holds promise for transforming diagnostic and prognostic paradigms, offering hope for improved patient outcomes and precision medicine approaches.

摘要

神经退行性疾病,如阿尔茨海默病(AD)、帕金森病(PD)、亨廷顿舞蹈病(HD)和肌萎缩侧索硬化症(ALS),因其不可逆转的进展以及对患者、护理人员和医疗保健系统的重大影响,正成为日益严峻的社会挑战。尽管在基于临床和影像学的诊断方面取得了进展,但这些疾病往往在晚期才被发现,这限制了治疗干预的效果。基因组学和转录组学技术的最新突破,包括全基因组测序、单细胞RNA测序(scRNA-seq)和基于CRISPR的筛选,彻底改变了该领域,为早期诊断和个性化预后提供了新途径。基因组学方法阐明了疾病特异性的遗传风险因素和分子途径,而转录组学研究则确定了与疾病进展和严重程度相关的阶段特异性生物标志物。此外,全基因组关联研究(GWAS)、多基因风险评分(PRS)和空间转录组学能够根据患者的风险概况和预后轨迹对其进行分层。功能基因组学的进展揭示了可操作的靶点,如ALS中的ATXN2和AD中的TREM2,为量身定制的治疗策略铺平了道路。尽管取得了这些成就,但由于疾病的异质性和神经退行性病理生理学的复杂性,将基因组学发现转化为临床实践仍面临挑战。未来基因技术的整合有望改变诊断和预后模式,为改善患者预后和精准医学方法带来希望。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d240/11855287/a003a5fe5817/genes-16-00135-g001.jpg

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