Mittal Krittika, Xu Ke, Zheng Jingyun, Bayen Stephane, Fobil Julius, Basu Niladri
Department of Natural Resource Sciences, McGill University, 21111 Lakeshore Road, Sainte-Anne-de-Bellevue, Quebec, H9X3V9, Canada.
Department of Food Science and Agricultural Chemistry, McGill University, 21111 Lakeshore Road, Sainte-Anne-de-Bellevue, Quebec, H9X3V9, Canada.
Env Sci Adv. 2024 Dec 1;3(12):1802-1813. doi: 10.1039/d4va00178h. Epub 2024 Oct 29.
Effect-based methods (EBM) are of growing interest in environmental monitoring programs. Few EBM have incorporated transcriptomics even though these provide a wealth of biological information and can be modeled to yield transcriptomic points of departure (tPODs). The study objectives were to: A) characterize cytotoxic effects of soil extracts on the rainbow trout RTgill-W1 and the human Caco-2 cell lines; B) measure gene expression changes and calculate tPODs; and C) compare in vitro responses to available measures of plastic-related compounds and metals. Extracts were prepared from 35 soil samples collected at the Agbogbloshie E-waste site (Accra, Ghana). Cells were exposed to six soil concentrations (0.3 to 9.4 mg dry weight of extract (eQsed)/ml). Many samples caused cytotoxicity with RTgill cells being more sensitive than Caco-2 cells. Eleven samples were analyzed for transcriptomics in both cell lines, with responses measured in all samples (52 to 5925 differentially expressed genes) even in the absence of cytotoxicity. In RTgill cells there was concordance between cytotoxic measures in tPOD values (spearman = 0.85). Though trends between in vitro measures and contaminant data were observed, more work is needed in this area before definitive conclusions are drawn. Nonetheless, this study helps support ongoing efforts in establishing alternative testing strategies (e.g., alternative to animal methods; toxicogenomics) for the assessment of complex environmental samples.
基于效应的方法(EBM)在环境监测项目中越来越受到关注。尽管转录组学能提供丰富的生物学信息且可通过建模得出转录组学出发值(tPOD),但很少有基于效应的方法将其纳入。本研究的目标是:A)表征土壤提取物对虹鳟RTgill-W1细胞系和人Caco-2细胞系的细胞毒性作用;B)测量基因表达变化并计算tPOD;C)比较体外反应与塑料相关化合物和金属的现有测量值。从阿博布罗西电子垃圾场(加纳阿克拉)采集的35个土壤样本中制备提取物。细胞暴露于六种土壤浓度(0.3至9.4毫克提取物干重(eQsed)/毫升)。许多样本导致细胞毒性,RTgill细胞比Caco-2细胞更敏感。对两个细胞系中的11个样本进行了转录组学分析,即使在没有细胞毒性的情况下,所有样本(52至5925个差异表达基因)中也都测量到了反应。在RTgill细胞中,细胞毒性测量值与tPOD值之间存在一致性(斯皮尔曼相关系数=0.85)。尽管观察到了体外测量值与污染物数据之间的趋势,但在得出明确结论之前,该领域还需要更多的研究。尽管如此,本研究有助于支持正在进行的建立替代测试策略(例如,替代动物方法;毒理基因组学)以评估复杂环境样本的努力。