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岛屿大小塑造了一个重要物种形成者(鸟类: )的基因组多样性。

Island size shapes genomic diversity in a great speciator (Aves: ).

作者信息

Gyllenhaal Ethan F, Andersen Michael J, Moyle Robert G, Manthey Joseph D

机构信息

Department of Biological Sciences, Texas Tech University, Lubbock, TX, USA.

Department of Biology and Museum of Southwestern Biology, University of New Mexico, Albuquerque, NM, USA.

出版信息

Biol Lett. 2025 Mar;21(3):20240692. doi: 10.1098/rsbl.2024.0692. Epub 2025 Mar 5.

DOI:10.1098/rsbl.2024.0692
PMID:40037528
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11879625/
Abstract

Islands have long represented natural laboratories for studying many aspects of ecology and evolutionary biology, from speciation to community assembly. One aspect that has been well documented is the correlation between island size and taxonomic diversity, likely due to decreased complexity and population size on small islands. This same logic can apply to genetic diversity, which should predictably decrease with effective population size. The island size-diversity correlation has received support over the years but often focuses on single metrics of genetic diversity. Here, we use white-eyes in the Solomon Islands to study the correlation between island size and various metrics related to genetic diversity, including runs of homozygosity and fixation of transposable elements. We find that almost all these metrics strongly correlate with island size, and in turn with each other. We infer that island size is independently correlated with these different variables, demonstrating that population size impacts genomic metrics of diversity in a variety of ways across temporal and hierarchical scales.

摘要

长期以来,岛屿一直是研究生态学和进化生物学诸多方面的天然实验室,从物种形成到群落组装皆是如此。一个有充分文献记载的方面是岛屿大小与分类多样性之间的相关性,这可能是由于小岛上的复杂性和种群规模降低所致。同样的逻辑也适用于遗传多样性,遗传多样性预计会随着有效种群规模的减小而降低。多年来,岛屿大小与多样性的相关性得到了支持,但往往侧重于遗传多样性的单一指标。在这里,我们利用所罗门群岛的白眼鸟来研究岛屿大小与各种与遗传多样性相关的指标之间的相关性,包括纯合子片段和转座元件的固定。我们发现,几乎所有这些指标都与岛屿大小密切相关,进而彼此相关。我们推断岛屿大小与这些不同变量独立相关,这表明种群规模在时间和层次尺度上以多种方式影响多样性的基因组指标。

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本文引用的文献

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Genomes of Galápagos Mockingbirds Reveal the Impact of Island Size and Past Demography on Inbreeding and Genetic Load in Contemporary Populations.加拉帕戈斯模仿鸟的基因组揭示了岛屿大小和过去的种群统计学对当代种群近亲繁殖和遗传负荷的影响。
Mol Ecol. 2025 Mar;34(5):e17665. doi: 10.1111/mec.17665. Epub 2025 Feb 6.
2
Divergence and serial colonization shape genetic variation and define conservation units in Asian elephants.分歧和连续的殖民化塑造了亚洲象的遗传变异,并定义了保护单位。
Curr Biol. 2024 Oct 21;34(20):4692-4703.e5. doi: 10.1016/j.cub.2024.08.062. Epub 2024 Sep 27.
3
Giraffe lineages are shaped by major ancient admixture events.
长颈鹿的世系是由主要的古代混合事件塑造的。
Curr Biol. 2024 Apr 8;34(7):1576-1586.e5. doi: 10.1016/j.cub.2024.02.051. Epub 2024 Mar 12.
4
Genomic Underpinnings of Population Persistence in Isle Royale Moose.岛屿驯鹿种群在罗亚尔岛得以存续的基因组基础
Mol Biol Evol. 2023 Feb 3;40(2). doi: 10.1093/molbev/msad021.
5
Runs of homozygosity reveal past bottlenecks and contemporary inbreeding across diverging populations of an island-colonizing bird.纯合性连续片段揭示了一个岛屿殖民鸟类不同种群过去的瓶颈效应和当代近亲繁殖情况。
Mol Ecol. 2023 Apr;32(8):1972-1989. doi: 10.1111/mec.16865. Epub 2023 Feb 10.
6
Comparison of adult census size and effective population size support the need for continued protection of two Solomon Island endemics.对成年普查规模和有效种群规模的比较支持了持续保护两种所罗门群岛特有物种的必要性。
Emu. 2021;121(1-2):45-54. doi: 10.1080/01584197.2021.1915163. Epub 2021 May 25.
7
Quantifying the relationship between genetic diversity and population size suggests natural selection cannot explain Lewontin's Paradox.量化遗传多样性与种群大小之间的关系表明,自然选择无法解释莱文廷悖论。
Elife. 2021 Aug 19;10:e67509. doi: 10.7554/eLife.67509.
8
A phylogeny of white-eyes based on ultraconserved elements.基于超保守元件的白眼鸟系统发育学。
Mol Phylogenet Evol. 2021 Nov;164:107273. doi: 10.1016/j.ympev.2021.107273. Epub 2021 Jul 29.
9
Island songbirds as windows into evolution in small populations.岛屿鸣禽:小种群进化的窗口
Curr Biol. 2021 Mar 22;31(6):1303-1310.e4. doi: 10.1016/j.cub.2020.12.040. Epub 2021 Jan 20.
10
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Evolution. 2020 Aug;74(8):1788-1803. doi: 10.1111/evo.14043. Epub 2020 Jun 24.