Dong Qi, Guo Yingying, Lv Chen, Ren Lingxue, Chen Bo, Wang Yan, Liu Yang, Liu Mingyue, Liu Kaidong, Zhang Nan, Wang Linzhu, Sang Shaocong, Li Xin, Hui Yang, Liang Haihai, Gu Yunyan
Department of Systems Biology, College of Bioinformatics Science and Technology, Harbin Medical University, No. 157 Baojian Road, Nangang District, Harbin 150081, China.
Department of Biochemistry and Molecular Biology, College of Basic Medical Sciences, Harbin Medical University, No. 157 Baojian Road, Nangang District, Harbin 150081, China.
Brief Bioinform. 2025 Mar 4;26(2). doi: 10.1093/bib/bbaf082.
Cancer cells acquire necessary functional capabilities for malignancy through the influence of the nervous system. We evaluate the extent of neural infiltration within the tumor microenvironment (TME) across multiple cancer types, highlighting its role as a cancer hallmark. We identify cancer-related neural genes using 40 bulk RNA-seq datasets across 10 cancer types, developing a predictive score for cancer-related neural infiltration (C-Neural score). Cancer samples with elevated C-Neural scores exhibit perineural invasion, recurrence, metastasis, higher stage or grade, or poor prognosis. Epithelial cells show the highest C-Neural scores among all cell types in 55 single-cell RNA sequencing datasets. The epithelial cells with high C-Neural scores (epi-highCNs) characterized by increased copy number variation, reduced cell differentiation, higher epithelial-mesenchymal transition scores, and elevated metabolic level. Epi-highCNs frequently communicate with Schwann cells by FN1 signaling pathway. The co-culture experiment indicates that Schwann cells may facilitate cancer progression through upregulation of VDAC1. Moreover, C-Neural scores positively correlate with the infiltration of antitumor immune cells, indicating potential response for immunotherapy. Melanoma patients with high C-Neural scores may benefit from trametinib. These analyses illuminate the extent of neural influence within TME, suggesting potential role as a cancer hallmark and offering implications for effective therapeutic strategies against cancer.
癌细胞通过神经系统的影响获得恶性肿瘤所需的功能能力。我们评估了多种癌症类型的肿瘤微环境(TME)中神经浸润的程度,强调了其作为癌症标志的作用。我们使用来自10种癌症类型的40个批量RNA测序数据集确定与癌症相关的神经基因,开发了一种癌症相关神经浸润的预测评分(C神经评分)。C神经评分升高的癌症样本表现出神经周围浸润、复发、转移、更高的分期或分级,或预后不良。在55个单细胞RNA测序数据集中,上皮细胞在所有细胞类型中表现出最高的C神经评分。具有高C神经评分的上皮细胞(epi-highCNs)的特征是拷贝数变异增加、细胞分化降低、上皮-间质转化评分升高和代谢水平升高。Epi-highCNs经常通过FN1信号通路与施万细胞通信。共培养实验表明,施万细胞可能通过上调VDAC1促进癌症进展。此外,C神经评分与抗肿瘤免疫细胞的浸润呈正相关,表明对免疫治疗有潜在反应。C神经评分高的黑色素瘤患者可能从曲美替尼中获益。这些分析阐明了TME内神经影响的程度,表明其作为癌症标志的潜在作用,并为有效的抗癌治疗策略提供了启示。