Shi Kai, He Qisheng, Zhao Pengyang, Li Lin, Liu Qiaohui, Wu Zhengxia, Wang Yanjun, Dong Huachen, Yu Juehua
College of Computer Science and Engineering, Guilin University of Technology, Guilin, China.
Guangxi Key Laboratory of Embedded Technology and Intelligent Systems, Guilin University of Technology, Guilin, China.
Comput Struct Biotechnol J. 2025 Feb 27;27:879-886. doi: 10.1016/j.csbj.2025.02.034. eCollection 2025.
The gut microbiota is a fundamental component of human health and has been increasingly implicated in the etiology of neurological disorders. Neurotransmitters, acting as key mediators of gut-brain communication, are closely associated with both the progression and therapeutic modulation of brain diseases. Despite significant advancements in microbiome research, the complex interplay between gut microbiota and neurological disorders remains poorly understood, and a comprehensive resource integrating these associations is lacking. To bridge this gap, we developed the Brain Disease Gut Microbiota Database (BGMDB), a rigorously curated repository documenting experimentally validated relationships between gut microbiota and brain diseases. BGMDB encompasses 1419 associations involving 609 gut microbiota taxa and 43 brain disorders, along with 184 tripartite interactions linking brain diseases, neurotransmitters, and microbiota across six neurotransmitter systems. Additionally, BGMDB integrates genetic data from the gutMGene database, allowing users to explore microbiota-mediated genetic associations with brain disease pathology and neuroanatomical alterations. A user-friendly interface enables researchers to navigate relevant information through graphical query tools, comprehensive browsing functionalities, and data retrieval options. Our BGMDB provides an unparalleled resource for advancing mechanistic insights into gut-brain interactions, facilitating novel microbiota-targeted therapeutic strategies for neurological disorders. BGMDB is freely available at: http://bgmdb.online/bgmdb.
肠道微生物群是人类健康的基本组成部分,并且越来越多地被认为与神经疾病的病因有关。神经递质作为肠脑通讯的关键介质,与脑部疾病的进展和治疗调节密切相关。尽管微生物组研究取得了重大进展,但肠道微生物群与神经疾病之间复杂的相互作用仍知之甚少,并且缺乏整合这些关联的综合资源。为了填补这一空白,我们开发了脑疾病肠道微生物群数据库(BGMDB),这是一个经过严格策划的知识库,记录了肠道微生物群与脑部疾病之间经过实验验证的关系。BGMDB包含1419个关联,涉及609种肠道微生物分类群和43种脑部疾病,以及184种三方相互作用,这些相互作用连接了六种神经递质系统中的脑部疾病、神经递质和微生物群。此外,BGMDB整合了来自gutMGene数据库的遗传数据,允许用户探索微生物群介导的与脑部疾病病理学和神经解剖学改变的遗传关联。一个用户友好的界面使研究人员能够通过图形查询工具、全面的浏览功能和数据检索选项来浏览相关信息。我们的BGMDB为深入了解肠脑相互作用的机制提供了无与伦比的资源,促进了针对神经疾病的新型微生物群靶向治疗策略的发展。BGMDB可在以下网址免费获取:http://bgmdb.online/bgmdb。