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CCP4云平台中的项目自动化:实现定制化与高通量效率。

Project automation in CCP4 Cloud: Enabling customization and high-throughput efficiency.

作者信息

Krissinel Eugene, Fando Maria, Kovalevskiy Oleg, Keegan Ronan, Wills Jools, Lebedev Andrey, Uski Ville, Ballard Charles

机构信息

Research Complex at Harwell, Scientific Computing Department, Science and Technology Facilities Council, Harwell, UK.

出版信息

Protein Sci. 2025 Jun;34(6):e70176. doi: 10.1002/pro.70176.

DOI:10.1002/pro.70176
PMID:40411413
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12102756/
Abstract

The rapid advancement of automatic structure solution methods, driven by the availability of high-quality predicted structures from AlphaFold and the growing adoption of multi-crystal and serial experiments, has created a pressing need for streamlining routine operations, automating structure solution projects, and efficiently handling large volumes of data. Modern software solutions must be both robust and user-friendly, supporting manual workflows while enabling high-throughput operations to keep pace with the high data collection rates of modern beamlines. Here, we present new developments in CCP4 Cloud that address these challenges by providing predefined and customizable automatic workflows, which can be seamlessly integrated with experimental facilities, offering a powerful solution for modern macromolecular crystallography. CCP4 Cloud is available as a public service at https://cloud.ccp4.ac.uk.

摘要

在AlphaFold提供的高质量预测结构以及多晶体和串行实验越来越广泛应用的推动下,自动结构解析方法迅速发展,这使得精简日常操作、自动化结构解析项目以及高效处理大量数据成为迫切需求。现代软件解决方案必须既强大又用户友好,既要支持手动工作流程,又要实现高通量操作,以跟上现代光束线的高数据采集速率。在此,我们介绍CCP4 Cloud的新进展,通过提供预定义且可定制的自动工作流程来应对这些挑战,这些工作流程可与实验设施无缝集成,为现代大分子晶体学提供了一个强大的解决方案。CCP4 Cloud可作为公共服务在https://cloud.ccp4.ac.uk获取。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/35c3/12102756/e3a57e9ffd8c/PRO-34-e70176-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/35c3/12102756/e35cebe21f53/PRO-34-e70176-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/35c3/12102756/73b2bdd440af/PRO-34-e70176-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/35c3/12102756/448aefb0db48/PRO-34-e70176-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/35c3/12102756/3facda3632f4/PRO-34-e70176-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/35c3/12102756/b2969ffe5cc0/PRO-34-e70176-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/35c3/12102756/5d05d06b593b/PRO-34-e70176-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/35c3/12102756/29b4fd865fff/PRO-34-e70176-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/35c3/12102756/75d137f3b219/PRO-34-e70176-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/35c3/12102756/e3a57e9ffd8c/PRO-34-e70176-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/35c3/12102756/e35cebe21f53/PRO-34-e70176-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/35c3/12102756/73b2bdd440af/PRO-34-e70176-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/35c3/12102756/448aefb0db48/PRO-34-e70176-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/35c3/12102756/3facda3632f4/PRO-34-e70176-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/35c3/12102756/b2969ffe5cc0/PRO-34-e70176-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/35c3/12102756/5d05d06b593b/PRO-34-e70176-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/35c3/12102756/29b4fd865fff/PRO-34-e70176-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/35c3/12102756/75d137f3b219/PRO-34-e70176-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/35c3/12102756/e3a57e9ffd8c/PRO-34-e70176-g005.jpg

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本文引用的文献

1
Slice'N'Dice: maximizing the value of predicted models for structural biologists.切片与切块:为结构生物学家最大化预测模型的价值
Acta Crystallogr D Struct Biol. 2025 Mar 1;81(Pt 3):105-121. doi: 10.1107/S2059798325001251. Epub 2025 Feb 20.
2
Updated resources for exploring experimentally-determined PDB structures and Computed Structure Models at the RCSB Protein Data Bank.在RCSB蛋白质数据库中探索实验确定的PDB结构和计算结构模型的更新资源。
Nucleic Acids Res. 2025 Jan 6;53(D1):D564-D574. doi: 10.1093/nar/gkae1091.
3
UniProt: the Universal Protein Knowledgebase in 2025.
通用蛋白质知识库(UniProt):2025年的情况
Nucleic Acids Res. 2025 Jan 6;53(D1):D609-D617. doi: 10.1093/nar/gkae1010.
4
The success rate of processed predicted models in molecular replacement: implications for experimental phasing in the AlphaFold era.处理后预测模型在分子置换中的成功率:对 AlphaFold 时代实验相位的影响。
Acta Crystallogr D Struct Biol. 2024 Nov 1;80(Pt 11):766-779. doi: 10.1107/S2059798324009380. Epub 2024 Oct 3.
5
Fragment library screening by X-ray crystallography and binding site analysis on thioredoxin glutathione reductase of Schistosoma mansoni.应用 X 射线晶体学和对曼氏血吸虫硫氧还蛋白谷胱甘肽还原酶的结合部位分析进行片段文库筛选。
Sci Rep. 2024 Jan 18;14(1):1582. doi: 10.1038/s41598-024-52018-2.
6
AlphaFold Protein Structure Database in 2024: providing structure coverage for over 214 million protein sequences.2024 年的 AlphaFold 蛋白质结构数据库:为超过 2.14 亿个蛋白质序列提供结构覆盖。
Nucleic Acids Res. 2024 Jan 5;52(D1):D368-D375. doi: 10.1093/nar/gkad1011.
7
The CCP4 suite: integrative software for macromolecular crystallography.Ccp4 套件:用于大分子晶体学的集成软件。
Acta Crystallogr D Struct Biol. 2023 Jun 1;79(Pt 6):449-461. doi: 10.1107/S2059798323003595. Epub 2023 May 30.
8
GEMMI and Servalcat restrain REFMAC5.GEMMI 和 Servalcat 限制了 REFMAC5 的使用。
Acta Crystallogr D Struct Biol. 2023 May 1;79(Pt 5):368-373. doi: 10.1107/S2059798323002413. Epub 2023 May 4.
9
Accelerating crystal structure determination with iterative AlphaFold prediction.利用迭代 AlphaFold 预测加速晶体结构测定。
Acta Crystallogr D Struct Biol. 2023 Mar 1;79(Pt 3):234-244. doi: 10.1107/S205979832300102X. Epub 2023 Feb 27.
10
ModelCraft: an advanced automated model-building pipeline using Buccaneer.ModelCraft:一个使用 Buccaneer 的高级自动化模型构建流水线。
Acta Crystallogr D Struct Biol. 2022 Sep 1;78(Pt 9):1090-1098. doi: 10.1107/S2059798322007732. Epub 2022 Aug 25.