使用主成分分析(PCA)和t-分布随机邻域嵌入(t-SNE)分析剖析非致瘤性和三阴性乳腺癌细胞系的形态学和功能动力学

Dissecting Morphological and Functional Dynamics of Non-Tumorigenic and Triple-Negative Breast Cancer Cell Lines Using PCA and t-SNE Analysis.

作者信息

Almahdi Yazan A, Schwark Eva R, Mclaughlin Aidan J, Xhabija Besa

机构信息

Department of Natural Science, College of Arts Sciences and Letters, University of Michigan-Dearborn, Dearborn, Michigan, USA.

出版信息

Cancer Rep (Hoboken). 2025 Jul;8(7):e70257. doi: 10.1002/cnr2.70257.

Abstract

BACKGROUND

Triple-negative breast cancer (TNBC) poses significant challenges due to its aggressive nature and lack of targeted therapies. Understanding the cellular behaviors of TNBC is crucial for developing effective treatments.

AIMS

This study aims to compare the morphological characteristics of non-tumorigenic MCF10A and aggressive MDA-MB-231 TNBC cell lines using advanced analytical techniques.

METHODS AND RESULTS

Advanced techniques such as Principal Component Analysis (PCA), t-Distributed Stochastic Neighbor Embedding (t-SNE), and digital holographic microscopy were utilized. Cellular features such as area, migration, motility, irregularity, and optical thickness were thoroughly analyzed over time. Our results revealed significant morphological differences between the MCF10A and MDA-MB-231 cell lines. Specifically, MDA-MB-231 cells displayed enhanced motility and a smaller, more variable size, attributes that may facilitate their invasive potential. In contrast, MCF10A cells exhibited larger sizes and more regular migration patterns, suggesting stability in structured tissue environments. Additionally, temporal analysis highlighted consistent phenotypic behaviors over time, with MDA-MB-231 cells demonstrating higher optical thickness and irregularity, indicating potential structural complexities associated with malignant transformation. Correlative analysis further confirmed these results by revealing connections between cell size, motility, and optical properties crucial for understanding cell behavior within their microenvironment.

CONCLUSION

The profound differences in cellular dynamics between MCF10A and MDA-MB-231 cell lines underscore the unique adaptive mechanisms of TNBC cells. Our study provides valuable insights into the cellular foundations of TNBC aggressiveness, offering a foundation for future research aimed at understanding the mechanistic underpinnings of TNBC progression and therapeutic targeting.

摘要

背景

三阴性乳腺癌(TNBC)因其侵袭性本质和缺乏靶向治疗而带来重大挑战。了解TNBC的细胞行为对于开发有效的治疗方法至关重要。

目的

本研究旨在使用先进的分析技术比较非致瘤性MCF10A和侵袭性MDA-MB-231 TNBC细胞系的形态特征。

方法与结果

采用了主成分分析(PCA)、t分布随机邻域嵌入(t-SNE)和数字全息显微镜等先进技术。随着时间的推移,对细胞面积、迁移、运动性、不规则性和光学厚度等特征进行了全面分析。我们的结果显示MCF10A和MDA-MB-231细胞系之间存在显著的形态差异。具体而言,MDA-MB-231细胞表现出增强的运动性和更小、更具变异性的尺寸,这些特性可能有助于其侵袭潜力。相比之下,MCF10A细胞呈现出更大的尺寸和更规则的迁移模式,表明在结构化组织环境中具有稳定性。此外,时间分析突出了随着时间推移一致的表型行为,MDA-MB-231细胞表现出更高的光学厚度和不规则性,表明与恶性转化相关的潜在结构复杂性。相关性分析通过揭示细胞大小、运动性和光学特性之间的联系进一步证实了这些结果,这些联系对于理解细胞在其微环境中的行为至关重要。

结论

MCF10A和MDA-MB-231细胞系之间细胞动力学的深刻差异强调了TNBC细胞独特的适应性机制。我们的研究为TNBC侵袭性的细胞基础提供了有价值的见解,为未来旨在理解TNBC进展的机制基础和治疗靶点的研究奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e772/12203836/176925acdc50/CNR2-8-e70257-g006.jpg

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