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贺兰山高原林蛙(Rana kukunoris)的宏基因组和转录组数据集

Metagenomic and Transcriptomic Datasets of Plateau Brown Frogs (Rana kukunoris) from the Helan Mountains.

作者信息

Zhang Nan, Zhao Yao, Zhang Zhirong, Zhan Meiling, Zhao Xuyang, Zhang Yi, Sun Jingyu, Zhang Yuxuan, Teng Liwei, Liu Zhensheng

机构信息

College of Wildlife and Protected Area, Northeast Forestry University, Harbin, 150040, China.

Key Laboratory of Conservation Biology, National Forestry and Grassland Administration, Harbin, 150090, China.

出版信息

Sci Data. 2025 Jul 14;12(1):1219. doi: 10.1038/s41597-025-05585-6.

Abstract

Global climate change has become a primary driving factor behind the biodiversity crisis in amphibians, making it crucial to understand how climate change affects species and their potential responses. The plateau brown frog (Rana kukunoris) is often regarded as an ideal ecological indicator species, yet research on its environmental adaptation mechanisms based on transcriptomic and microbiomic studies remains limited. Therefore, this study investigates the adaptation strategies of the plateau brown frog to environmental changes, providing extensive transcriptomic and the first comprehensive metagenomic dataset from two distinctly different environmental regions (eastern and western slopes of the Helan Mountains). We gathered transcriptomic data from three tissues (blood, liver, and muscle), resulting in 294,962 unigenes and 570,192 transcripts. Metagenomic sequencing identified major bacterial groups, including Firmicutes, Proteobacteria, Bacteroidetes, Spirochetes, and Actinobacteria. In summary, the results of this study can be used to further explore the associations among microbiota, host, and environment, which are crucial for comprehending the mechanisms of environmental adaptation in this species and contributing to the conservation of amphibian biodiversity.

摘要

全球气候变化已成为两栖动物生物多样性危机背后的主要驱动因素,因此了解气候变化如何影响物种及其潜在反应至关重要。高原林蛙(Rana kukunoris)常被视为理想的生态指示物种,但基于转录组学和微生物组学研究其环境适应机制的研究仍然有限。因此,本研究调查了高原林蛙对环境变化的适应策略,提供了来自两个截然不同环境区域(贺兰山东西坡)的广泛转录组数据和首个全面的宏基因组数据集。我们从三个组织(血液、肝脏和肌肉)收集了转录组数据,得到了294,962个单基因和570,192个转录本。宏基因组测序确定了主要细菌类群,包括厚壁菌门、变形菌门、拟杆菌门、螺旋体门和放线菌门。总之,本研究结果可用于进一步探索微生物群、宿主和环境之间的关联,这对于理解该物种的环境适应机制以及促进两栖动物生物多样性保护至关重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3b2/12259888/6342f5d871ea/41597_2025_5585_Fig1_HTML.jpg

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