Shayler Dominic W H, Stachelek Kevin, Cambier Linda, Lee Sunhye, Bai Jinlun, Bhat Bhavana, Reid Mark W, Weisenberger Daniel J, Aparicio Jennifer G, Kim Yeha, Singh Mitali, Bay Maxwell, Thornton Matthew E, Doyle Eamon K, Fouladian Zachary, Erberich Stephan G, Grubbs Brendan H, Bonaguidi Michael A, Craft Cheryl Mae, Singh Hardeep P, Cobrinik David
The Vision Center, Department of Surgery, and Saban Research Institute, Children's Hospital Los Angeles, Los Angeles, United States.
Development, Stem Cell, and Regenerative Medicine Program, Keck School of Medicine, University of Southern California, Los Angeles, United States.
Elife. 2025 Aug 6;13:RP101918. doi: 10.7554/eLife.101918.
Human cone photoreceptors differ from rods and serve as the retinoblastoma cell-of-origin, yet the developmental basis for their distinct behaviors is poorly understood. Here, we used deep full-length single-cell RNA-sequencing (scRNA-seq) to distinguish post-mitotic cone and rod developmental states and identify cone-specific features related to retinoblastomagenesis. The analyses revealed nascent, immediately post-mitotic cone and rod precursors characterized by higher THRB or NRL regulon activities, immature and maturing cone and rod precursors with concurrent cone- and rod-related gene and regulon expression, and distinct early and late cone and rod maturation states distinguished by maturation-associated declines in RAX regulon activity. Cell-state-specific gene expression features inferred from full-length scRNA-seq were consistent with past 3' scRNA-seq analyses. Beyond the cell state characterizations, full-length scRNA-seq revealed that both L/M cone and rod precursors co-expressed and RNAs yet differentially expressed functionally antagonistic isoforms and prematurely terminated transcripts. Moreover, early L/M cone precursors sequentially expressed several lncRNAs along with , which composed the seventh most L/M-cone-specific regulon, and , which was implicated in the cone precursors' proliferative response to loss. These findings reveal previously unresolved photoreceptor precursor states and suggest a role for early cone-precursor-intrinsic expression in retinoblastoma initiation.
人类视锥光感受器与视杆不同,是视网膜母细胞瘤的细胞起源,但对其独特行为的发育基础了解甚少。在这里,我们使用深度全长单细胞RNA测序(scRNA-seq)来区分有丝分裂后的视锥和视杆发育状态,并确定与视网膜母细胞瘤发生相关的视锥特异性特征。分析揭示了新生的、有丝分裂后立即出现的视锥和视杆前体细胞,其特征是较高的THRB或NRL调控子活性;未成熟和成熟的视锥和视杆前体细胞,同时具有视锥和视杆相关基因及调控子表达;以及以RAX调控子活性的成熟相关下降为特征的不同的早期和晚期视锥和视杆成熟状态。从全长scRNA-seq推断的细胞状态特异性基因表达特征与过去的3' scRNA-seq分析一致。除了细胞状态表征外,全长scRNA-seq还揭示,L/M视锥和视杆前体细胞均共表达了 和 RNA,但差异表达了功能拮抗的 异构体和过早终止的 转录本。此外,早期L/M视锥前体细胞依次表达了几种lncRNAs以及 ,它们组成了第七个最具L/M视锥特异性的调控子,以及 ,它与视锥前体细胞对 缺失的增殖反应有关。这些发现揭示了以前未解决的光感受器前体细胞状态,并提示早期视锥前体细胞内在 表达在视网膜母细胞瘤起始中的作用。