蛋白质折叠的玩具模型。 - Suppr

Suppr

超能文献

Toy model for protein folding.

作者信息

Stillinger FH, Head-Gordon T, Hirshfeld CL

出版信息

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1993 Aug;48(2):1469-1477. doi: 10.1103/physreve.48.1469.

DOI:10.1103/physreve.48.1469

PMID:9960736

Abstract

摘要

相似文献

Toy model for protein folding.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1993 Aug;48(2):1469-1477. doi: 10.1103/physreve.48.1469.

Coarse-grained models of protein folding: toy models or predictive tools?

Curr Opin Struct Biol. 2008 Feb;18(1):10-5. doi: 10.1016/j.sbi.2007.10.005. Epub 2007 Dec 21.

Collective aspects of protein folding illustrated by a toy model.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1995 Sep;52(3):2872-2877. doi: 10.1103/physreve.52.2872.

Dynamical chaos and power spectra in toy models of heteropolymers and proteins.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 2000 Sep;62(3 Pt B):4025-31. doi: 10.1103/physreve.62.4025.

Effective stochastic dynamics on a protein folding energy landscape.

J Chem Phys. 2006 Aug 7;125(5):054910. doi: 10.1063/1.2229206.

Sketching protein aggregation with a physics-based toy model.

J Chem Phys. 2013 Sep 21;139(11):115101. doi: 10.1063/1.4820793.

Homeodomain-interacting protein kinase phosphorylates the Drosophila Paired box protein 6 (Pax6) homologues Twin of eyeless and Eyeless.

Insect Mol Biol. 2018 Apr;27(2):198-211. doi: 10.1111/imb.12363. Epub 2017 Dec 4.

Two-dimensional fluorescence resonance energy transfer as a probe for protein folding: a theoretical study.

J Chem Phys. 2008 Mar 21;128(11):115102. doi: 10.1063/1.2835611.

Modeling potential effects of reduced calories in kids' meals with toy giveaways.

Child Obes. 2014 Feb;10(1):58-63. doi: 10.1089/chi.2013.0082. Epub 2013 Dec 4.

Characteristics of particulate matter emissions from toy cars with electric motors.

J Air Waste Manag Assoc. 2015 Apr;65(4):492-9. doi: 10.1080/10962247.2015.1005255.

引用本文的文献

An improved stochastic fractal search algorithm for 3D protein structure prediction.

J Mol Model. 2018 May 3;24(6):125. doi: 10.1007/s00894-018-3644-5.

Differential evolution for protein folding optimization based on a three-dimensional AB off-lattice model.

J Mol Model. 2016 Oct;22(10):252. doi: 10.1007/s00894-016-3104-z. Epub 2016 Sep 30.

Protein folding optimization based on 3D off-lattice model via an improved artificial bee colony algorithm.

J Mol Model. 2015 Oct;21(10):261. doi: 10.1007/s00894-015-2806-y. Epub 2015 Sep 17.

Protein structure prediction with local adjust tabu search algorithm.

BMC Bioinformatics. 2014;15 Suppl 15(Suppl 15):S1. doi: 10.1186/1471-2105-15-S15-S1. Epub 2014 Dec 3.

A dynamical approach to protein folding.

J Biol Phys. 2001 Jun;27(2-3):181-203. doi: 10.1023/A:1013104123892.

3D protein structure prediction with genetic tabu search algorithm.

BMC Syst Biol. 2010 May 28;4 Suppl 1(Suppl 1):S6. doi: 10.1186/1752-0509-4-S1-S6.

Structure optimization of the two-dimensional off-lattice hydrophobic-hydrophilic model.

J Biol Phys. 2009 Aug;35(3):245-53. doi: 10.1007/s10867-009-9152-1. Epub 2009 Jun 11.

Enhanced sampling in generalized ensemble with large gap of sampling parameter: case study in temperature space random walk.

J Chem Phys. 2009 May 21;130(19):194112. doi: 10.1063/1.3139192.

Reliable protein folding on complex energy landscapes: the free energy reaction path.

Biophys J. 2008 Sep 15;95(6):2692-701. doi: 10.1529/biophysj.108.133132. Epub 2008 May 30.

Simulation via direct computation of partition functions.

Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Sep;76(3 Pt 2):036708. doi: 10.1103/PhysRevE.76.036708. Epub 2007 Sep 20.

文献AI研究员

20分钟写一篇综述，助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型，支持多种主流文档格式。

立即体验

相似文献

Toy model for protein folding.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1993 Aug;48(2):1469-1477. doi: 10.1103/physreve.48.1469.

Coarse-grained models of protein folding: toy models or predictive tools?

Curr Opin Struct Biol. 2008 Feb;18(1):10-5. doi: 10.1016/j.sbi.2007.10.005. Epub 2007 Dec 21.

Collective aspects of protein folding illustrated by a toy model.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1995 Sep;52(3):2872-2877. doi: 10.1103/physreve.52.2872.

Dynamical chaos and power spectra in toy models of heteropolymers and proteins.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 2000 Sep;62(3 Pt B):4025-31. doi: 10.1103/physreve.62.4025.

Effective stochastic dynamics on a protein folding energy landscape.

J Chem Phys. 2006 Aug 7;125(5):054910. doi: 10.1063/1.2229206.

Sketching protein aggregation with a physics-based toy model.

J Chem Phys. 2013 Sep 21;139(11):115101. doi: 10.1063/1.4820793.

Homeodomain-interacting protein kinase phosphorylates the Drosophila Paired box protein 6 (Pax6) homologues Twin of eyeless and Eyeless.

Insect Mol Biol. 2018 Apr;27(2):198-211. doi: 10.1111/imb.12363. Epub 2017 Dec 4.

Two-dimensional fluorescence resonance energy transfer as a probe for protein folding: a theoretical study.

J Chem Phys. 2008 Mar 21;128(11):115102. doi: 10.1063/1.2835611.

Modeling potential effects of reduced calories in kids' meals with toy giveaways.

Child Obes. 2014 Feb;10(1):58-63. doi: 10.1089/chi.2013.0082. Epub 2013 Dec 4.

Characteristics of particulate matter emissions from toy cars with electric motors.

J Air Waste Manag Assoc. 2015 Apr;65(4):492-9. doi: 10.1080/10962247.2015.1005255.

引用本文的文献

An improved stochastic fractal search algorithm for 3D protein structure prediction.

J Mol Model. 2018 May 3;24(6):125. doi: 10.1007/s00894-018-3644-5.

Differential evolution for protein folding optimization based on a three-dimensional AB off-lattice model.

J Mol Model. 2016 Oct;22(10):252. doi: 10.1007/s00894-016-3104-z. Epub 2016 Sep 30.

Protein folding optimization based on 3D off-lattice model via an improved artificial bee colony algorithm.

J Mol Model. 2015 Oct;21(10):261. doi: 10.1007/s00894-015-2806-y. Epub 2015 Sep 17.

Protein structure prediction with local adjust tabu search algorithm.

BMC Bioinformatics. 2014;15 Suppl 15(Suppl 15):S1. doi: 10.1186/1471-2105-15-S15-S1. Epub 2014 Dec 3.

A dynamical approach to protein folding.

J Biol Phys. 2001 Jun;27(2-3):181-203. doi: 10.1023/A:1013104123892.

3D protein structure prediction with genetic tabu search algorithm.

BMC Syst Biol. 2010 May 28;4 Suppl 1(Suppl 1):S6. doi: 10.1186/1752-0509-4-S1-S6.

Structure optimization of the two-dimensional off-lattice hydrophobic-hydrophilic model.

J Biol Phys. 2009 Aug;35(3):245-53. doi: 10.1007/s10867-009-9152-1. Epub 2009 Jun 11.

Enhanced sampling in generalized ensemble with large gap of sampling parameter: case study in temperature space random walk.

J Chem Phys. 2009 May 21;130(19):194112. doi: 10.1063/1.3139192.

Reliable protein folding on complex energy landscapes: the free energy reaction path.

Biophys J. 2008 Sep 15;95(6):2692-701. doi: 10.1529/biophysj.108.133132. Epub 2008 May 30.

Simulation via direct computation of partition functions.

Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Sep;76(3 Pt 2):036708. doi: 10.1103/PhysRevE.76.036708. Epub 2007 Sep 20.