用分支扩增法检测凡纳滨对虾中的传染性皮下和造血组织坏死病毒(IHHNV)
Detection of infectious hypodermal and hematopoietic necrosis virus (IHHNV) in Litopenaeus vannamei by ramification amplification assay.
作者信息
Teng Ping-Hua, Lee Pei-Yu, Lee Fu-Chun, Chien Hung-Wen, Chen Man-Shu, Sung Ping-Feng, Su Chen, Ou Bor-Rung
机构信息
Department of Animal Science and Biotechnology, Tunghai University, Taichung 40704, Taiwan, ROC.
出版信息
Dis Aquat Organ. 2006 Dec 14;73(2):103-11. doi: 10.3354/dao073103.
Infectious hypodermal and hematopoietic necrosis virus (IHHNV) is a single-stranded DNA virus that causes developmental and growth abnormalities in Pacific white shrimp Litopenaeus vannamei (also known as Penaeus vannamei). Nucleic acid based methods such as in situ hybridization (ISH) and PCR have been commonly used for IHHNV detection. Ramification amplification (RAM), an isothermal nucleic acid amplification approach, was used in this study to detect IHHNV in L. vannamei. RAM offers many advantages over PCR, including simple procedures and short detection time, and is labor-saving and cost-effective. RAM exponentially amplifies a circular oligonucleotide amplicon (C probe) after a target-specific ligation step through sequential primer extension and strand displacement processes. The conditions of an IHHNV RAM assay were optimized using artificial templates and targets prior to application. Using DNA of IHHNV-infected L. vannamei as targets, results revealed that RAM amplified target DNA with similar sensitivity as PCR. RAM offers competitive levels of speed, simplicity and sensitivity among various pathogen diagnostic methods.
传染性皮下和造血组织坏死病毒(IHHNV)是一种单链DNA病毒,可导致凡纳滨对虾(也称为南美白对虾)出现发育和生长异常。基于核酸的方法,如原位杂交(ISH)和聚合酶链反应(PCR),已被广泛用于检测IHHNV。本研究采用一种等温核酸扩增方法——分支扩增(RAM)来检测凡纳滨对虾中的IHHNV。与PCR相比,RAM具有许多优势,包括操作简单、检测时间短,且省力、成本效益高。在经过靶标特异性连接步骤后通过连续引物延伸和链置换过程,RAM能使环状寡核苷酸扩增子(C探针)呈指数级扩增。在应用之前,使用人工模板和靶标对IHHNV RAM检测的条件进行了优化。以感染IHHNV的凡纳滨对虾的DNA作为靶标,结果显示RAM扩增靶标DNA的灵敏度与PCR相似。在各种病原体诊断方法中,RAM在速度、简便性和灵敏度方面具有竞争力。