DNA微阵列分析揭示了大鼠前列腺癌细胞系中的转移相关基因。

DNA microarray analysis reveals metastasis-associated genes in rat prostate cancer cell lines.

作者信息

Reyes Ismail, Tiwari Raj, Geliebter Jan, Reyes Niradiz

机构信息

Department of Microbiology and Immunology, New York Medical College, Valhalla, NY, USA.

出版信息

Biomedica. 2007 Jun;27(2):190-203. Epub 2007 Aug 21.

DOI:
Abstract

INTRODUCTION

The molecular and cellular mechanisms involved in prostate cancer progression towards a hormone-independent and highly invasive, metastatic phenotype, are not well understood. Cell lines with different metastatic potential, when analyzed by microarray techniques, offer valuable tools for identifying genes associated with the metastatic phenotype.

OBJECTIVES

Gene expression profiles were compared for two rat prostate cancer cell lines with differing metastatic abilities in order to better characterized molecular underpinnings of the prostate cancer metastatic process.

MATERIALS AND METHODS

Affymetrix arrays were used to analyze gene expression of two rat prostate cancer cell lines, MAT-LyLu and G. Microarray data were analyzed using pathway and functional group analysis. A selected set of genes was subjected to real-time polymerase chain reaction for validating the microarray data.

RESULTS

Microarray data analysis revealed differential expression of genes from a number of signaling and metabolic pathways. Overexpression was detected in 48 genes and underexpression in 59 genes of the MAT-LyLu line compared to the standard G line. Genes were grouped into functional categories, including epithelial-extracellular matrix interaction, cell motility, cell proliferation, and transporters, among others. Many of these genes were not previously associated to prostate cancer metastasis.

CONCLUSIONS

Many genes with altered expression associated with a metastatic prostate cancer phenotype were identified. Further validation of these genes in human prostate samples will determine their usefulness as biomarkers for early diagnosis of recurrence or metastasis of prostate cancer, as well as potential therapeutic targets for this disease.

摘要

引言

前列腺癌向激素非依赖性、高侵袭性转移表型进展所涉及的分子和细胞机制尚未完全明确。通过微阵列技术分析具有不同转移潜能的细胞系,为鉴定与转移表型相关的基因提供了有价值的工具。

目的

比较两种具有不同转移能力的大鼠前列腺癌细胞系的基因表达谱,以更好地表征前列腺癌转移过程的分子基础。

材料与方法

使用Affymetrix芯片分析两种大鼠前列腺癌细胞系MAT-LyLu和G的基因表达。利用通路和功能组分析对微阵列数据进行分析。对一组选定的基因进行实时聚合酶链反应以验证微阵列数据。

结果

微阵列数据分析揭示了许多信号传导和代谢通路中基因的差异表达。与标准G细胞系相比,MAT-LyLu细胞系中有48个基因过表达,59个基因低表达。基因被分为功能类别,包括上皮-细胞外基质相互作用、细胞运动、细胞增殖和转运蛋白等。其中许多基因以前未与前列腺癌转移相关联。

结论

鉴定出许多与转移性前列腺癌表型相关的表达改变的基因。在人类前列腺样本中对这些基因进行进一步验证,将确定它们作为前列腺癌复发或转移早期诊断生物标志物以及该疾病潜在治疗靶点的有用性。

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