核糖体A位点对氨酰tRNA的特异性
Specificity of the ribosomal A site for aminoacyl-tRNAs.
作者信息
Dale Taraka, Fahlman Richard P, Olejniczak Mikołaj, Uhlenbeck Olke C
机构信息
Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA.
出版信息
Nucleic Acids Res. 2009 Mar;37(4):1202-10. doi: 10.1093/nar/gkn1040. Epub 2009 Jan 7.
Although some experiments suggest that the ribosome displays specificity for the identity of the esterified amino acid of its aminoacyl-tRNA substrate, a study measuring dissociation rates of several misacylated tRNAs containing the GAC anticodon from the A site showed little indication for such specificity. In this article, an expanded set of misacylated tRNAs and two 2'-deoxynucleotide-substituted mRNAs are used to demonstrate the presence of a lower threshold in k(off) values for aa-tRNA binding to the A site. When a tRNA binds sufficiently well to reach this threshold, additional stabilizing effects due to the esterified amino acid or changes in tRNA sequence are not observed. However, specificity for different amino acid side chains and the tRNA body is observed when tRNA binding is sufficiently weaker than this threshold. We propose that uniform aa-tRNA binding to the A site may be a consequence of a conformational change in the ribosome, induced by the presence of the appropriate combination of contributions from the anticodon, amino acid and tRNA body.
尽管一些实验表明核糖体对其氨酰 - tRNA底物中酯化氨基酸的身份具有特异性,但一项测量几种含有GAC反密码子的错配氨酰 - tRNA从A位点解离速率的研究几乎没有显示出这种特异性的迹象。在本文中,使用一组扩展的错配氨酰 - tRNA和两个2'-脱氧核苷酸取代的mRNA来证明氨酰 - tRNA与A位点结合的k(off)值存在较低阈值。当一个tRNA结合得足够好以达到这个阈值时,未观察到由于酯化氨基酸或tRNA序列变化而产生的额外稳定作用。然而,当tRNA结合比这个阈值足够弱时,可观察到对不同氨基酸侧链和tRNA主体的特异性。我们提出,氨酰 - tRNA与A位点的均匀结合可能是核糖体构象变化的结果,这种变化是由反密码子、氨基酸和tRNA主体的适当组合的存在所诱导的。