年轻蛋白质比老蛋白质经历更多的可变选择压力。
Young proteins experience more variable selection pressures than old proteins.
机构信息
Department of Biology, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
出版信息
Genome Res. 2010 Nov;20(11):1574-81. doi: 10.1101/gr.109595.110. Epub 2010 Oct 4.
It is well known that young proteins tend to experience weaker purifying selection and evolve more quickly than old proteins. Here, we show that, in addition, young proteins tend to experience more variable selection pressures over time than old proteins. We demonstrate this pattern in three independent taxonomic groups: yeast, Drosophila, and mammals. The increased variability of selection pressures on young proteins is highly significant even after controlling for the fact that young proteins are typically shorter and experience weaker purifying selection than old proteins. The majority of our results are consistent with the hypothesis that the function of a young gene tends to change over time more readily than that of an old gene. At the same time, our results may be caused in part by young genes that serve constant functions over time, but nevertheless appear to evolve under changing selection pressures due to depletion of adaptive mutations. In either case, our results imply that the evolution of a protein-coding sequence is partly determined by its age and origin, and not only by the phenotypic properties of the encoded protein. We discuss, via specific examples, the consequences of these findings for understanding of the sources of evolutionary novelty.
众所周知,年轻的蛋白质往往经历较弱的净化选择,比老蛋白质进化得更快。在这里,我们表明,除了这一点,年轻的蛋白质随着时间的推移往往会经历更多的选择压力变化。我们在三个独立的分类群中证明了这一模式:酵母、果蝇和哺乳动物。即使在控制了年轻蛋白质通常比老蛋白质短且经历较弱的净化选择这一事实之后,年轻蛋白质所经历的选择压力的可变性增加仍然具有高度显著性。我们的大部分结果与这样一种假设一致,即年轻基因的功能随着时间的推移更容易发生变化,而老基因的功能则更不容易发生变化。与此同时,我们的结果可能部分是由于随着时间的推移,年轻的基因具有恒定的功能,但由于适应性突变的耗尽,它们似乎在不断变化的选择压力下进化。在任何一种情况下,我们的结果都意味着蛋白质编码序列的进化部分取决于其年龄和起源,而不仅仅取决于编码蛋白的表型特性。我们通过具体的例子讨论了这些发现对理解进化新颖性来源的影响。