2011 年至 2013 年期间,加利福尼亚州洛杉矶某医疗体系中产碳青霉烯类耐药肠杆菌科细菌的表型和分子特征。

Phenotypic and molecular characteristics of carbapenem-resistant Enterobacteriaceae in a health care system in Los Angeles, California, from 2011 to 2013.

机构信息

Marie Bashir Institute for Infectious Diseases and Biosecurity, University of Sydney, Sydney, Australia.

Pathology & Laboratory Medicine, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, California, USA.

出版信息

J Clin Microbiol. 2014 Nov;52(11):4003-9. doi: 10.1128/JCM.01397-14. Epub 2014 Sep 10.

Abstract

Carbapenem-resistant Enterobacteriaceae (CRE) are a concern for health care in the United States but remain relatively uncommon in California. We describe the phenotype, clonality, and carbapenemase-encoding genes present in CRE isolated from patients at a Californian tertiary health care system. CRE for this study were identified by evaluating the antibiograms of Enterobacteriaceae isolated in the UCLA Health System from 2011 to 2013 for isolates that were not susceptible to meropenem and/or imipenem. The identification of these isolates was subsequently confirmed by matrix-associated laser desorption ionization-time of flight, and broth microdilution tests were repeated to confirm the CRE phenotype. Real-time PCR for bla(KPC), bla(SME), bla(IMP), bla(NDM-1), bla(VIM), and bla(OXA-48) was performed. Clonality was assessed by repetitive sequence-based PCR (repPCR) and multilocus sequence typing (MLST). Of 15,839 nonduplicate clinical Enterobacteriaceae isolates, 115 (0.73%) met the study definition for CRE. This number increased from 0.5% (44/8165) in the first half of the study to 0.9% (71/7674) in the second (P = 0.004). The most common CRE species were Klebsiella pneumoniae, Enterobacter aerogenes, and Escherichia coli. A carbapenemase-encoding gene was found in 81.7% (94/115) of CRE and included bla(KPC) (78.3%), bla(NDM-1) (0.9%), and bla(SME) (2.6%). The majority of bla(KPC) genes were in K. pneumoniae isolates, which fell into 14 clonal groups on typing. bla(KPC) was identified in more than one species of CRE cultured from the same patient in four cases. Three bla(SME)-carrying Serratia marcescens isolates and one bla(NDM-1) carrying Providencia rettgeri isolate were detected. CRE are increasing in California, and carbapenemases, particularly KPC, are a common mechanism for carbapenem resistance in this region.

摘要

耐碳青霉烯类肠杆菌科细菌(CRE)是美国医疗保健领域的一个关注点,但在加利福尼亚州仍相对少见。我们描述了从加利福尼亚州一家三级医疗保健系统的患者中分离出的 CRE 的表型、克隆性和携带的碳青霉烯酶编码基因。本研究中的 CRE 通过评估 2011 年至 2013 年在加州大学洛杉矶分校卫生系统中分离的肠杆菌科的抗生素图来确定,这些分离株对美罗培南和/或亚胺培南不敏感。这些分离株的鉴定随后通过基质辅助激光解吸电离飞行时间得到确认,并且重复肉汤微量稀释试验以确认 CRE 表型。进行 bla(KPC)、bla(SME)、bla(IMP)、bla(NDM-1)、bla(VIM) 和 bla(OXA-48)的实时 PCR。通过重复序列基元 PCR(repPCR)和多位点序列分型(MLST)评估克隆性。在 15839 个非重复临床肠杆菌科分离株中,有 115 株(0.73%)符合 CRE 的研究定义。这一数字从研究的前半部分的 0.5%(44/8165)增加到后半部分的 0.9%(71/7674)(P=0.004)。最常见的 CRE 物种是肺炎克雷伯菌、产气肠杆菌和大肠埃希菌。在 81.7%(94/115)的 CRE 中发现了一种携带碳青霉烯酶的基因,包括 bla(KPC)(78.3%)、bla(NDM-1)(0.9%)和 bla(SME)(2.6%)。大多数 bla(KPC)基因位于产酸克雷伯菌分离株中,这些分离株在分型时分为 14 个克隆群。在 4 例患者中,从同一患者培养出的超过一种 CRE 中鉴定出 bla(KPC)。检测到 3 株携带 bla(SME)的粘质沙雷氏菌分离株和 1 株携带 bla(NDM-1)的雷特氏普罗威登斯菌分离株。CRE 在加利福尼亚州不断增加,碳青霉烯酶,特别是 KPC,是该地区耐碳青霉烯类的常见机制。

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