木质素降解真菌模式菌株白腐真菌F17的基因组序列。

Genome sequence of the white-rot fungus F17, a type strain of lignin degrader fungus.

作者信息

Yao Mengwei, Li Wenman, Duan Zihong, Zhang Yinliang, Jia Rong

机构信息

School of Life Sciences, Economic and Technology Development Zone, Anhui University, 111 jiulong Road, Hefei, Anhui 230601 People's Republic of China.

Anhui Key Laboratory of Modern Biomanufacturing, Anhui University, Hefei, 230601 People's Republic of China.

出版信息

Stand Genomic Sci. 2017 Sep 12;12:55. doi: 10.1186/s40793-017-0267-x. eCollection 2017.

DOI:10.1186/s40793-017-0267-x

PMID:28919942

原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5596461/

Abstract

, a cosmopolitan white-rot fungus, degrades lignin and lignin-derived aromatic compounds. In this study, we report the high-quality draft genome sequence of F17, isolated from a decaying hardwood tree in the vicinity of Hefei, China. The genome is 44,362,654 bp, with a GC content of 49.64% and a total of 10,391 predicted protein-coding genes. In addition, a total of 18 snRNA, 842 tRNA, 15 rRNA operons and 11,710 repetitive sequences were also identified. The genomic data provides insights into the mechanisms of the efficient lignin decomposition of this strain.

摘要

一种世界性的白腐真菌，能降解木质素和木质素衍生的芳香族化合物。在本研究中，我们报告了从中国合肥附近一棵腐烂的阔叶树中分离出的F17的高质量基因组草图序列。该基因组为44362654 bp，GC含量为49.64%，共预测有10391个蛋白质编码基因。此外，还鉴定出总共18个snRNA、842个tRNA、15个rRNA操纵子和11710个重复序列。这些基因组数据为深入了解该菌株高效分解木质素的机制提供了线索。