结直肠癌中人类miR-32基因启动子区域的分析
Analysis of the promoter region of the human miR-32 gene in colorectal cancer.
作者信息
Wu Weiyun, Tan Wenkai, Ye Shicai, Zhou Yu, Quan Juanhua
机构信息
Department of Gastroenterology, Affiliated Hospital of Guangdong Medical University, Zhanjiang, Guangdong 524001, P.R. China.
出版信息
Oncol Lett. 2019 Apr;17(4):3743-3750. doi: 10.3892/ol.2019.10042. Epub 2019 Feb 14.
The pathogenesis of colorectal cancer (CRC) is poorly understood. MicroRNA (miR)-32 upregulation in CRC tissues was previously reported, where it increased the proliferation, migration and invasion, and reduced apoptosis of CRC cells by inhibiting the expression of phosphatase and tensin homolog (PTEN). However, the mechanism underlying miR-32 upregulation remains unknown. miR-32 is an intronic miRNA located within intron 14 of the transmembrane protein 245 gene (TMEM245). The present study aimed to elucidate the biological pathways underlying miR-32 regulation in CRC. A truncated promoter containing the 5'-flanking region of TMEM245/miR-32 gene was constructed. The promoter region was analyzed by dual luciferase reporter assay in CRC cells. DNA pull-down assay and mass spectrometry (MS) were used to identify proteins binding to the core promoter. Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG) and transcription factor (TF) analyses were used to identify the binding proteins. The -320 to -1 bp fragment of the 5'-flanking region exhibited the highest luciferase activity. The regions spanning -606 to -320 bp exhibited a significant decrease in luciferase activity, compared with the -320 to -1 bp fragment. DNA pull-down assay and MS revealed 403 potential miR-32 promoter binding proteins. GO and KEGG pathway analysis indicated that these proteins were involved in numerous physiological and biochemical processes, including 'structural molecule activity', 'RNA binding', 'small molecule metabolic process' and 'biogenesis'. Furthermore, TF analysis revealed 10 potential interacting TFs, including SMAD family member 1 (SMAD1), signal transducer and activator of transcription 1 (STAT1) and forkhead box K1 (Foxk1). These results suggested that the core promoter region may be located within-320 to -1 bp of the 5'-flanking region of TMEM245/miR-32 gene, while the region from -606 to -320 bp may harbor repressive regulatory elements. The TFs SMAD1, STAT1 and Foxk1 may be involved in the transcriptional regulation of miR-32.
结直肠癌(CRC)的发病机制尚不清楚。此前有报道称CRC组织中微小RNA(miR)-32上调,它通过抑制磷酸酶和张力蛋白同源物(PTEN)的表达来增加CRC细胞的增殖、迁移和侵袭,并减少其凋亡。然而,miR-32上调的潜在机制仍不清楚。miR-32是一种位于跨膜蛋白245基因(TMEM245)第14内含子内的内含子miRNA。本研究旨在阐明CRC中miR-32调控的生物学途径。构建了包含TMEM245/miR-32基因5'侧翼区域的截短启动子。通过双荧光素酶报告基因检测在CRC细胞中分析启动子区域。采用DNA下拉试验和质谱(MS)鉴定与核心启动子结合的蛋白质。利用基因本体论(GO)、京都基因与基因组百科全书(KEGG)和转录因子(TF)分析来鉴定结合蛋白。5'侧翼区域的-320至-1 bp片段表现出最高的荧光素酶活性。与-320至-1 bp片段相比,-606至-320 bp区域的荧光素酶活性显著降低。DNA下拉试验和MS揭示了403种潜在的miR-32启动子结合蛋白。GO和KEGG通路分析表明,这些蛋白质参与了许多生理和生化过程,包括“结构分子活性”、“RNA结合”、“小分子代谢过程”和“生物合成”。此外,TF分析揭示了10种潜在的相互作用TF,包括SMAD家族成员1(SMAD1)、信号转导和转录激活因子1(STAT1)和叉头框K1(Foxk1)。这些结果表明,核心启动子区域可能位于TMEM245/miR-32基因5'侧翼区域的-320至-1 bp内,而-606至-320 bp区域可能含有抑制性调控元件。TFs SMAD1、STAT1和Foxk1可能参与miR-32的转录调控。