中性粒细胞时间转录特征定义了跨生物区室的中性粒细胞单一连续体。

The neutrotime transcriptional signature defines a single continuum of neutrophils across biological compartments.

作者信息

Grieshaber-Bouyer Ricardo, Radtke Felix A, Cunin Pierre, Stifano Giuseppina, Levescot Anaïs, Vijaykumar Brinda, Nelson-Maney Nathan, Blaustein Rachel B, Monach Paul A, Nigrovic Peter A

机构信息

Division of Rheumatology, Inflammation, and Immunity, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.

Department of Medicine V, Hematology, Oncology and Rheumatology, Heidelberg University Hospital, Heidelberg, Germany.

出版信息

Nat Commun. 2021 May 17;12(1):2856. doi: 10.1038/s41467-021-22973-9.

Abstract

Neutrophils are implicated in multiple homeostatic and pathological processes, but whether functional diversity requires discrete neutrophil subsets is not known. Here, we apply single-cell RNA sequencing to neutrophils from normal and inflamed mouse tissues. Whereas conventional clustering yields multiple alternative organizational structures, diffusion mapping plus RNA velocity discloses a single developmental spectrum, ordered chronologically. Termed here neutrotime, this spectrum extends from immature pre-neutrophils, largely in bone marrow, to mature neutrophils predominantly in blood and spleen. The sharpest increments in neutrotime occur during the transitions from pre-neutrophils to immature neutrophils and from mature marrow neutrophils to those in blood. Human neutrophils exhibit a similar transcriptomic pattern. Neutrophils migrating into inflamed mouse lung, peritoneum and joint maintain the core mature neutrotime signature together with new transcriptional activity that varies with site and stimulus. Together, these data identify a single developmental spectrum as the dominant organizational theme of neutrophil heterogeneity.

摘要

中性粒细胞参与多种体内平衡和病理过程,但功能多样性是否需要离散的中性粒细胞亚群尚不清楚。在这里,我们对来自正常和发炎小鼠组织的中性粒细胞进行单细胞RNA测序。传统聚类产生了多种替代组织结构,而扩散映射加上RNA速度揭示了一个按时间顺序排列的单一发育谱。这个谱在这里被称为中性粒细胞时间谱(neutrotime),它从主要存在于骨髓中的未成熟前中性粒细胞延伸到主要存在于血液和脾脏中的成熟中性粒细胞。中性粒细胞时间谱中最显著的增加发生在从前中性粒细胞向未成熟中性粒细胞以及从成熟骨髓中性粒细胞向血液中的中性粒细胞的转变过程中。人类中性粒细胞表现出类似的转录组模式。迁移到发炎的小鼠肺、腹膜和关节中的中性粒细胞维持核心成熟中性粒细胞时间谱特征以及随部位和刺激而变化的新转录活性。总之,这些数据确定了单一发育谱是中性粒细胞异质性的主要组织主题。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b06/8129206/46a2be115472/41467_2021_22973_Fig1_HTML.jpg

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