描述黄杆菌属、乳杆菌属和大西洋菌属三个新的 C50 类胡萝卜素产生菌。
Description of Microbacterium luteum sp. nov., Microbacterium cremeum sp. nov., and Microbacterium atlanticum sp. nov., three novel C50 carotenoid producing bacteria.
机构信息
Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, School of Life Sciences, Xiamen University, Xiamen, 361102, Fujian, P. R. China.
Key Laboratory of Marine Biogenetic Resources, Third Institute of Oceanography, Ministry of Natural Resources, Xiamen, 361005, Fujian, P. R. China.
出版信息
J Microbiol. 2021 Oct;59(10):886-897. doi: 10.1007/s12275-021-1186-5. Epub 2021 Sep 7.
We have identified three Microbacterium strains, A18JL200, NY27, and WY121, that produce C50 carotenoids. Taxonomy shows they represent three novel species. These strains shared < 98.5% 16S rRNA gene sequence identity with each other and were closely related to Microbacterium aquimaris JCM 15625, Microbacterium yannicii JCM 18959, Microbacterium ureisolvens CFH S00084, and Microbacterium hibisci CCTCC AB 2016180. Digital DNA-DNA hybridization (dDDH) values and average nucleotide identity (ANI) showed differences among the three strains and from their closest relatives, with values ranging from 20.4% to 34.6% and 75.5% to 87.6%, respectively. These values are below the threshold for species discrimination. Both morphology and physiology also differed from those of phylogenetically related Microbacterium species, supporting that they are indeed novel species. These strains produce C50 carotenoids (mainly decaprenoxanthin). Among the three novel species, A18JL200 had the highest total yield in carotenoids (6.1 mg/L or 1.2 mg/g dry cell weight). Unusual dual isoprenoid biosynthetic pathways (methylerythritol phosphate and mevalonate pathways) were annotated for strain A18JL200. In summary, we found strains of the genus Microbacterium that are potential producers of C50 carotenoids, but their genome has to be investigated further.
我们已经鉴定出三种产生 C50 类胡萝卜素的 Microbacterium 菌株,A18JL200、NY27 和 WY121。分类学表明它们代表三个新的种。这些菌株彼此的 16S rRNA 基因序列相似性<98.5%,与 Microbacterium aquimaris JCM 15625、Microbacterium yannicii JCM 18959、Microbacterium ureisolvens CFH S00084 和 Microbacterium hibisci CCTCC AB 2016180 密切相关。数字 DNA-DNA 杂交(dDDH)值和平均核苷酸同一性(ANI)显示,这三种菌株与它们最接近的亲缘关系存在差异,数值范围为 20.4%至 34.6%和 75.5%至 87.6%。这些值低于种间区分的阈值。形态和生理特性也与系统发育上相关的 Microbacterium 种不同,支持它们确实是新的种。这些菌株产生 C50 类胡萝卜素(主要为脱甲藻黄素)。在这三种新种中,A18JL200 的类胡萝卜素总产量最高(6.1mg/L 或 1.2mg/g 干细胞重量)。菌株 A18JL200 注释了不寻常的双异戊烯醇生物合成途径(甲基赤藓醇磷酸和甲羟戊酸途径)。综上所述,我们发现了具有潜在产生 C50 类胡萝卜素能力的 Microbacterium 菌株,但它们的基因组需要进一步研究。