基于深度学习特征的淋巴结转移术前预测
Preoperative prediction of lymph node metastasis using deep learning-based features.
作者信息
Cattell Renee, Ying Jia, Lei Lan, Ding Jie, Chen Shenglan, Serrano Sosa Mario, Huang Chuan
机构信息
Department of Biomedical Engineering, Stony Brook University, NY, 11794, Stony Brook, USA.
Department of Radiation Oncology, Renaissance School of Medicine, Stony Brook University, Stony Brook, NY, 11794, USA.
出版信息
Vis Comput Ind Biomed Art. 2022 Mar 7;5(1):8. doi: 10.1186/s42492-022-00104-5.
Lymph node involvement increases the risk of breast cancer recurrence. An accurate non-invasive assessment of nodal involvement is valuable in cancer staging, surgical risk, and cost savings. Radiomics has been proposed to pre-operatively predict sentinel lymph node (SLN) status; however, radiomic models are known to be sensitive to acquisition parameters. The purpose of this study was to develop a prediction model for preoperative prediction of SLN metastasis using deep learning-based (DLB) features and compare its predictive performance to state-of-the-art radiomics. Specifically, this study aimed to compare the generalizability of radiomics vs DLB features in an independent test set with dissimilar resolution. Dynamic contrast-enhancement images from 198 patients (67 positive SLNs) were used in this study. Of these subjects, 163 had an in-plane resolution of 0.7 × 0.7 mm, which were randomly divided into a training set (approximately 67%) and a validation set (approximately 33%). The remaining 35 subjects with a different in-plane resolution (0.78 × 0.78 mm) were treated as independent testing set for generalizability. Two methods were employed: (1) conventional radiomics (CR), and (2) DLB features which replaced hand-curated features with pre-trained VGG-16 features. The threshold determined using the training set was applied to the independent validation and testing dataset. Same feature reduction, feature selection, model creation procedures were used for both approaches. In the validation set (same resolution as training), the DLB model outperformed the CR model (accuracy 83% vs 80%). Furthermore, in the independent testing set of the dissimilar resolution, the DLB model performed markedly better than the CR model (accuracy 77% vs 71%). The predictive performance of the DLB model outperformed the CR model for this task. More interestingly, these improvements were seen particularly in the independent testing set of dissimilar resolution. This could indicate that DLB features can ultimately result in a more generalizable model.
淋巴结受累会增加乳腺癌复发的风险。对淋巴结受累进行准确的非侵入性评估对于癌症分期、手术风险评估和成本节约具有重要价值。放射组学已被提出用于术前预测前哨淋巴结(SLN)状态;然而,已知放射组学模型对采集参数敏感。本研究的目的是使用基于深度学习(DLB)的特征开发一种术前预测SLN转移的预测模型,并将其预测性能与最先进的放射组学进行比较。具体而言,本研究旨在比较放射组学与DLB特征在具有不同分辨率的独立测试集中的泛化能力。本研究使用了198例患者(67个阳性SLN)的动态对比增强图像。在这些受试者中,163例的平面分辨率为0.7×0.7mm,将其随机分为训练集(约67%)和验证集(约33%)。其余35例具有不同平面分辨率(0.78×0.78mm)的受试者作为泛化能力的独立测试集。采用了两种方法:(1)传统放射组学(CR),(2)DLB特征,即用预训练的VGG-16特征取代手工提取的特征。使用训练集确定的阈值应用于独立验证和测试数据集。两种方法都使用相同的特征约简、特征选择和模型创建程序。在验证集(与训练集分辨率相同)中,DLB模型的表现优于CR模型(准确率分别为83%和80%)。此外,在分辨率不同的独立测试集中,DLB模型的表现明显优于CR模型(准确率分别为77%和71%)。对于这项任务,DLB模型的预测性能优于CR模型。更有趣的是,这些改进尤其在分辨率不同的独立测试集中可见。这可能表明DLB特征最终可以产生一个更具泛化能力的模型。