宏基因组下一代测序在鹦鹉热衣原体肺炎诊断中的应用。
Application of Metagenomic Next-Generation Sequencing in the Diagnosis of Pneumonia Caused by Chlamydia psittaci.
机构信息
Department of Respiratory and Critical Care Medicine, The Second Affiliated Hospital of Chongqing Medical University, Chongqing, People's Republic of China.
Vision Medicals Center for Infection Disease, Guangzhou, People's Republic of China.
出版信息
Microbiol Spectr. 2022 Aug 31;10(4):e0238421. doi: 10.1128/spectrum.02384-21. Epub 2022 Aug 8.
Psittacosis is an uncommon disease which mainly presents as community-acquired pneumonia (CAP). We aim to apply metagenomic next-generation sequencing (mNGS) as a promising tool in the diagnosis of psittacosis pneumonia and to describe its clinical spectrum to provide physicians with a better understanding and recognition of this disease. Thirteen cases of psittacosis pneumonia were diagnosed by using mNGS. A retrospective analysis of the data on clinical manifestations, laboratory data, computed tomography (CT) images, new diagnosis tools, treatments, and outcomes was summarized. These patients had common symptoms of fever and weakness; some had poor appetite, cough, myalgia, and headache. Ten patients developed acute respiratory distress syndrome (ARDS), among which six patients were severe pneumonia cases and needed ventilator therapy. Most patients got psittacosis pneumonia during the cold season. Ten cases were sporadic, but three were family clustering. All of the 13 patients were traced to an exposure history to birds, cat, or poultry, among which 2 only touched the innards of killed poultry before cooking, which may be an atypical exposure history not been reported before, to our knowledge. Most patients had various degrees of liver dysfunction. Air-space consolidations, along with ground-glass opacities and reticular shadows, were detected on chest CT scan. mNGS takes 48 to 72 h to provide results and helps to diagnose psittacosis. After being diagnosed by mNGS, with effective medicines, all patients finally had complete recoveries. The use of mNGS can improve the diagnostic rate of psittacosis pneumonia and shorten the course of disease control. Psittacosis pneumonia is easily underdiagnosed and misdiagnosed. In this study, we use mNGS in the diagnosis of psittacosis pneumonia. We found this disease is prone in the cold season, and touching the innards of killed poultry during cooking may be an atypical exposure history which has not been reported before to our knowledge. There are sporadic cases and family outbreak cases as well. Except for typical symptoms of fever and weakness, headache may be the main and only symptom in some patients. The rate of severe pneumonia is high among inpatients with psittacosis pneumonia, and the incidence of hepatic involvements is also high. Psittacosis pneumonia can be cured if the diagnosis is accurate and in time, even if it is severe pneumonia on admission. Some problems worthy of our attention about psittacosis pneumonia were put forward, such as its sick season, special exposure history, the rate of severe disease, and the high cure rate. mNGS can quickly and objectively detect more rare pathogenic microorganisms in clinical specimens without the need for specific amplification and has an advantage in the diagnosis of rare pathogenic bacteria in difficult cases such as psittacosis pneumonia. The use of mNGS can improve the accuracy and reduce the delay in the diagnosis of psittacosis, which shortens the course of disease control.
鹦鹉热是一种不常见的疾病,主要表现为社区获得性肺炎(CAP)。我们旨在应用宏基因组下一代测序(mNGS)作为诊断鹦鹉热肺炎的有前途的工具,并描述其临床谱,以便为医生提供更好地理解和认识这种疾病。通过 mNGS 诊断了 13 例鹦鹉热肺炎。对临床表现、实验室数据、计算机断层扫描(CT)图像、新诊断工具、治疗和结局的数据进行了回顾性分析。这些患者有发热和乏力等常见症状;有些患者食欲不振、咳嗽、肌痛和头痛。10 例患者发生急性呼吸窘迫综合征(ARDS),其中 6 例为重症肺炎病例,需要呼吸机治疗。大多数患者在寒冷季节患上鹦鹉热肺炎。10 例为散发病例,但 3 例为家庭聚集性病例。所有 13 例患者均有接触鸟类、猫或家禽的暴露史,其中 2 例仅在烹饪前接触过杀死的家禽内脏,据我们所知,这可能是一种以前未报告过的非典型暴露史。大多数患者有不同程度的肝功能障碍。胸部 CT 扫描显示气腔实变,伴有磨玻璃影和网状阴影。mNGS 需要 48 至 72 小时才能提供结果,并有助于诊断鹦鹉热。通过 mNGS 诊断后,使用有效的药物,所有患者最终完全康复。mNGS 的使用可以提高鹦鹉热肺炎的诊断率并缩短疾病控制的病程。鹦鹉热肺炎容易被误诊和漏诊。在本研究中,我们使用 mNGS 诊断鹦鹉热肺炎。我们发现这种疾病在寒冷季节容易发生,而且据我们所知,在烹饪前接触杀死的家禽内脏可能是一种以前未报告过的非典型暴露史。既有散发病例,也有家庭暴发病例。除了发热和乏力等典型症状外,头痛可能是一些患者的主要且唯一症状。鹦鹉热肺炎住院患者中重症肺炎的发生率较高,肝受累的发生率也较高。如果诊断准确及时,即使入院时病情严重,鹦鹉热肺炎也可以治愈。我们提出了一些关于鹦鹉热肺炎值得我们关注的问题,例如其发病季节、特殊暴露史、重症疾病发生率和高治愈率。mNGS 可以快速、客观地检测临床标本中更多罕见的致病微生物,无需特定扩增,在诊断鹦鹉热等疑难病例中罕见的致病菌方面具有优势。mNGS 的使用可以提高鹦鹉热的诊断准确性并减少诊断延误,从而缩短疾病控制的病程。