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基于生物信息学分析鉴定牙周炎治疗的关键基因靶点。

Identification of Key Gene Targets for Periodontitis Treatment by Bioinformatics Analysis.

机构信息

Department of Stomatology, Shengjing Hospital of China Medical University, Shenyang, Liaoning, China.

出版信息

Biomed Res Int. 2022 Sep 29;2022:7992981. doi: 10.1155/2022/7992981. eCollection 2022.

Abstract

BACKGROUND

Periodontitis is considered to be the leading cause of tooth loss in adults, and it interacts with some serious systemic diseases. Periodontal basic therapy is the cornerstone of periodontal disease treatment and long-term maintenance and has a positive impact on the treatment of systemic diseases.

AIM

To explore the potential gene targets of periodontitis therapies by bioinformatics method.

METHODS

We analyzed the expression database (GSE6751) downloaded from the Gene Expression Omnibus (GEO) with weighted gene coexpression network analysis (WGCNA) to confirm the functional gene modules. Pathway enrichment network analyses the key genes in functional modules and verified the candidate genes from the samples in peripheral blood sources of GSE43525. Moreover, we confirmed the expression of target protein in the periodontal tissues of experimental periodontitis-afflicted mice using western blotting.

RESULTS

The functional gene modules were found to have biological processes, and , , , , , , , , , and were screened as candidates' genes in functional modules. The 921 DEG from GSE43525 and 418 DEG is from the green module of GSE6751 and identified , , , , , , and as target genes. Finally, FCGR1A (CD64) was confirmed as the key gene that affects periodontal treatment. Western blot analysis showed an increasing trend in the expression level of FCGR1A protein in the periodontal tissues of experimental periodontitis mice compared to normal mice.

CONCLUSIONS

FCGR1A (CD64) may be a key gene target for periodontal therapy in patients with periodontitis and other systemic diseases.

摘要

背景

牙周炎被认为是成年人牙齿丧失的主要原因,它与一些严重的系统性疾病相互作用。牙周基础治疗是牙周病治疗和长期维护的基石,对系统性疾病的治疗有积极影响。

目的

通过生物信息学方法探讨牙周炎治疗的潜在基因靶点。

方法

我们利用加权基因共表达网络分析(WGCNA)分析了从基因表达综合数据库(GEO)下载的表达数据库(GSE6751),以确认功能基因模块。通路富集网络分析功能模块中的关键基因,并从 GSE43525 外周血来源的样本中验证候选基因。此外,我们使用 Western blot 法证实了实验性牙周炎小鼠牙周组织中目标蛋白的表达。

结果

发现功能基因模块具有生物学过程,筛选出作为功能模块候选基因的、、、、、、、和。从 GSE43525 中获得的 921 个差异表达基因(DEG)和 GSE6751 中绿色模块的 418 个 DEG 鉴定出、、、、、、和作为目标基因。最后,确定 FCGR1A(CD64)为影响牙周治疗的关键基因。Western blot 分析显示,与正常小鼠相比,实验性牙周炎小鼠牙周组织中 FCGR1A 蛋白的表达水平呈上升趋势。

结论

FCGR1A(CD64)可能是牙周炎患者和其他系统性疾病牙周治疗的关键基因靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/94d0/9536999/fe72a2216912/BMRI2022-7992981.001.jpg

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