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半胱氨酸蛋白酶的比较分析揭示了粉螨中1类变应原的基因家族进化。

Comparative analysis of cysteine proteases reveals gene family evolution of the group 1 allergens in astigmatic mites.

作者信息

Shi Ling, Xiong Qing, Ao Fu Kiu, Wan Tsz Yau, Xiao Xiaojun, Liu Xiaoyu, Sun Baoqing, Tungtrongchitr Anchalee, Leung Ting Fan, Tsui Stephen Kwok Wing

机构信息

School of Biomedical Sciences, The Chinese University of Hong Kong, Hong Kong, China.

Hong Kong Bioinformatics Centre, The Chinese University of Hong Kong, Hong Kong, China.

出版信息

Clin Transl Allergy. 2023 Dec;13(12):e12324. doi: 10.1002/clt2.12324.

Abstract

BACKGROUND

Astigmatic mites contain potent allergens that can trigger IgE-mediated immune responses, leading to allergic diseases such as asthma, allergic rhinitis and atopic dermatitis. In house dust mites Dermatophagoides pteronyssinus and Dermatophagoides farinae, group 1 allergens (Der p 1 and Der f 1), characterized as papain-like cysteine proteases, have been defined as the major allergens that have high prevalence and potency. Previous studies of mite group 1 allergens mainly focused on identification, comparison of sequence and structure, as well as the investigation of cross-reactivity. To achieve a comprehensive view of mite group 1 allergens, we performed a comparative genomic analysis of all the cysteine proteases in six astigmatic mite species to elucidate the evolutionary relationships of group 1 allergens.

METHODS

Based on the high-quality and annotated genomes, all the cysteine proteases in six astigmatic mite species were identified by sequence homology search. The phylogenetic relationships, gene synteny and expression levels were revealed by bioinformatic tools. The allergenicity of recombinant cysteine proteases was evaluated by enzyme-linked immunosorbent assay.

RESULTS

Tandem duplication was revealed as the major feature of cysteine protease gene evolution in astigmatic mites. The high IgE-binding capacity and the significant expression level of the cysteine protease DP_007902.01 suggested its potential as a novel group 1 allergen of D. pteronyssinus. In addition, gene decay events were identified in the skin-burrowing parasitic mite Sarcoptes scabiei.

CONCLUSION

This comprehensive analysis provided insights into the evolution of cysteine proteases, as well as the component-resolved diagnosis of mite allergies.

摘要

背景

尘螨含有强效过敏原,可引发IgE介导的免疫反应,导致哮喘、过敏性鼻炎和特应性皮炎等过敏性疾病。在屋尘螨(粉尘螨和户尘螨)中,1类过敏原(Der p 1和Der f 1)被定义为主要过敏原,具有高患病率和强效性,其特征为木瓜蛋白酶样半胱氨酸蛋白酶。先前关于螨1类过敏原的研究主要集中在鉴定、序列和结构比较以及交叉反应性研究。为全面了解螨1类过敏原,我们对6种尘螨物种中的所有半胱氨酸蛋白酶进行了比较基因组分析,以阐明1类过敏原的进化关系。

方法

基于高质量的注释基因组,通过序列同源性搜索鉴定了6种尘螨物种中的所有半胱氨酸蛋白酶。利用生物信息学工具揭示了系统发育关系、基因共线性和表达水平。通过酶联免疫吸附测定评估重组半胱氨酸蛋白酶的致敏性。

结果

串联重复被揭示为尘螨半胱氨酸蛋白酶基因进化的主要特征。半胱氨酸蛋白酶DP_007902.01具有高IgE结合能力和显著表达水平,表明其作为粉尘螨新型1类过敏原的潜力。此外,在掘皮寄生螨疥螨中发现了基因衰减事件。

结论

这项全面分析为半胱氨酸蛋白酶的进化以及螨过敏的组分解析诊断提供了见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5492/10722327/525f2816f3ba/CLT2-13-e12324-g001.jpg

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