疼痛知识图谱嵌入模型的开发。
Development of a Knowledge Graph Embeddings Model for Pain.
机构信息
Institute of Psychiatry, Psychology and Neurosciences, King's College London, London, United Kingdom.
South London and Maudsley NHS Foundation Trust, London, United Kingdom.
出版信息
AMIA Annu Symp Proc. 2024 Jan 11;2023:299-308. eCollection 2023.
Pain is a complex concept that can interconnect with other concepts such as a disorder that might cause pain, a medication that might relieve pain, and so on. To fully understand the context of pain experienced by either an individual or across a population, we may need to examine all concepts related to pain and the relationships between them. This is especially useful when modeling pain that has been recorded in electronic health records. Knowledge graphs represent concepts and their relations by an interlinked network, enabling semantic and context-based reasoning in a computationally tractable form. These graphs can, however, be too large for efficient computation. Knowledge graph embeddings help to resolve this by representing the graphs in a low-dimensional vector space. These embeddings can then be used in various downstream tasks such as classification and link prediction. The various relations associated with pain which are required to construct such a knowledge graph can be obtained from external medical knowledge bases such as SNOMED CT, a hierarchical systematic nomenclature of medical terms. A knowledge graph built in this way could be further enriched with real-world examples of pain and its relations extracted from electronic health records. This paper describes the construction of such knowledge graph embedding models of pain concepts, extracted from the unstructured text of mental health electronic health records, combined with external knowledge created from relations described in SNOMED CT, and their evaluation on a subject-object link prediction task. The performance of the models was compared with other baseline models.
疼痛是一个复杂的概念,它可以与其他概念相互关联,例如可能导致疼痛的疾病、可能缓解疼痛的药物等。为了全面理解个体或人群所经历的疼痛的背景,我们可能需要检查与疼痛相关的所有概念及其之间的关系。在对电子健康记录中记录的疼痛进行建模时,这一点尤其有用。知识图通过相互关联的网络表示概念及其关系,以可计算的形式实现语义和基于上下文的推理。然而,这些图对于高效计算来说可能太大了。知识图嵌入通过将图表示为低维向量空间来帮助解决这个问题。然后可以将这些嵌入用于各种下游任务,如分类和链接预测。构建这样的知识图所需的与疼痛相关的各种关系可以从外部医学知识库(如 SNOMED CT,一种医疗术语的分层系统命名法)中获得。以这种方式构建的知识图可以通过从电子健康记录中提取的疼痛及其关系的真实世界示例进一步丰富。本文描述了从心理健康电子健康记录的非结构化文本中提取的疼痛概念的此类知识图嵌入模型的构建,结合了从 SNOMED CT 中描述的关系创建的外部知识,并在主体-对象链接预测任务上对其进行了评估。模型的性能与其他基线模型进行了比较。