巨噬细胞相关受体和配体的多组学分析揭示了肝细胞癌中一个强大的预后特征和亚型。

Multi-omics analysis of macrophage-associated receptor and ligand reveals a strong prognostic signature and subtypes in hepatocellular carcinoma.

机构信息

Department of Interventional and Vascular Surgery, Affiliated Hospital of Nantong University, Nantong, China.

Medical School, Nantong University, Nantong, China.

出版信息

Sci Rep. 2024 May 28;14(1):12163. doi: 10.1038/s41598-024-62668-x.

Abstract

Hepatocellular carcinoma (HCC) is a significant contributor to morbidity and mortality worldwide. The interaction between receptors and ligands is the primary mode of intercellular signaling and plays a vital role in the progression of HCC. This study aimed to identify the macrophage-related receptor ligand marker genes associated with HCC and further explored the molecular immune mechanisms attributed to altered biomarkers. Single-cell RNA sequencing data containing primary and recurrent samples were downloaded from the China National GeneBank. Cell types were first identified to explore differences between immune cells from different sample sources. CellChat analysis was used to infer and analyze intercellular communication networks quantitatively. Three molecular subtypes were constructed based on the screened twenty macrophage-associated receptor ligand genes. Bulk RNA-Seq data were downloaded from The Cancer Genome Atlas and Gene Expression Omnibus databases. After the screening, the minor absolute shrinkage and selection operator (LASSO) regression model was employed to identify key markers. After collecting peripheral blood and clinical information from patients, an enzyme-linked immunosorbent assay (ELISA) was used to detect the correlation between key markers and IL-10, one of the macrophage markers. After developing a new HCC risk adjustment model and conducting analysis, it was found that there were significant differences in immune status and gene mutations between the high-risk and low-risk groups of patients based on macrophage-associated receptor and ligand genes. This study identified SPP1, ANGPT2, and NCL as key biological targets for HCC. The drug-gene interaction network analysis identified wortmannin, ribavirin, and tarnafloxin as potential therapeutic drugs for the three key markers. In a clinical cohort study, patients with immune checkpoint inhibitor (ICI) resistance had significantly higher expression levels of OPN, ANGPT2, NCL, and IL-10 than patients with ICI-responsiveness. These three key markers were positively correlated with the expression level of IL-10. The signature based on macrophage-associated receptor and ligand genes can accurately predict the prognosis of patients with HCC and the sensitivity to immunotherapy. These results may help guide the development of targeted prevention and personalized treatment of HCC.

摘要

肝细胞癌(HCC)是全球发病率和死亡率的主要原因。受体与配体的相互作用是细胞间信号传递的主要方式,在 HCC 的进展中起着至关重要的作用。本研究旨在鉴定与 HCC 相关的巨噬细胞相关受体配体标记基因,并进一步探讨与改变的生物标志物相关的分子免疫机制。从中国国家基因库下载包含原发性和复发性样本的单细胞 RNA 测序数据。首先鉴定细胞类型,以探索不同样本来源的免疫细胞之间的差异。使用 CellChat 分析定量推断和分析细胞间通讯网络。基于筛选出的 20 个巨噬细胞相关受体配体基因构建了三个分子亚型。从癌症基因组图谱和基因表达综合数据库下载批量 RNA-Seq 数据。筛选后,采用最小绝对收缩和选择算子(LASSO)回归模型鉴定关键标志物。从患者收集外周血和临床信息后,采用酶联免疫吸附测定(ELISA)检测关键标志物与巨噬细胞标志物之一 IL-10 的相关性。建立新的 HCC 风险调整模型并进行分析后发现,基于巨噬细胞相关受体和配体基因,患者的高危和低危组之间在免疫状态和基因突变方面存在显著差异。本研究鉴定 SPP1、ANGPT2 和 NCL 为 HCC 的关键生物学靶标。药物-基因相互作用网络分析鉴定出 Wortmannin、利巴韦林和 Tarnafloxin 为这三个关键标志物的潜在治疗药物。在临床队列研究中,与免疫检查点抑制剂(ICI)耐药的患者相比,具有 ICI 反应性的患者的 OPN、ANGPT2、NCL 和 IL-10 表达水平明显更高。这三个关键标志物与 IL-10 的表达水平呈正相关。基于巨噬细胞相关受体和配体基因的特征可以准确预测 HCC 患者的预后和对免疫治疗的敏感性。这些结果可能有助于指导 HCC 的靶向预防和个体化治疗的发展。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4372/11133315/f0dbefc34604/41598_2024_62668_Fig1_HTML.jpg

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