Baranda Payal, Islam Shaikhul, Modi Ashish, Mistry Harsh, Al Obaid Sami, Ansari Mohammad Javed, Yadav Virendra Kumar, Patel Ashish, Joshi Madhvi, Sahoo Dipak Kumar, Bariya Himanshu
Department of Life Sciences, Hemchandracharya North Gujarat University, Patan, India.
Plant Pathology Division, Bangladesh Wheat and Maize Research Institute, Nashipur, Bangladesh.
Front Microbiol. 2024 May 23;15:1363879. doi: 10.3389/fmicb.2024.1363879. eCollection 2024.
Marine microorganisms are renowned for being a rich source of new secondary metabolites that are significant to humans. The fungi strain KHW-7 was isolated from the seawater collected from the Gulf of Khambhat, India, and identified as KHW-7. On a next-generation sequencing platform, KHW-7's whole-genome sequencing (WGS) and gene annotation were carried out using several bioinformatic methods. The 31.59 MB genome size, 52.3% GC, and 158 bp mean read length were discovered using WGS. This genome also contained 9,745 protein-coding genes, including 852 secreted proteins and 2048 transmembrane proteins. The antiSMASH algorithm used to analyze genomes found 25 secondary metabolite biosynthetic gene clusters (BGCs) that are abundant in terpene, non-ribosomal peptide synthetase (NRPS), and polyketides type 1 (T1PKS). To our knowledge, this is the first whole-genome sequence report of . The WGS analysis of KHW-7 indicated that this marine-derived fungus could be an efficient generator of bioactive secondary metabolites and an important industrial enzyme, both of which demand further investigation and development.
海洋微生物以其富含对人类具有重要意义的新次级代谢产物而闻名。真菌菌株KHW - 7是从印度肯帕德湾采集的海水中分离出来的,并被鉴定为KHW - 7。在下一代测序平台上,使用多种生物信息学方法对KHW - 7进行了全基因组测序(WGS)和基因注释。通过WGS发现该基因组大小为31.59 MB,GC含量为52.3%,平均读长为158 bp。该基因组还包含9745个蛋白质编码基因,其中包括852个分泌蛋白和2048个跨膜蛋白。用于分析基因组的antiSMASH算法发现了25个次级代谢产物生物合成基因簇(BGCs),这些基因簇富含萜类、非核糖体肽合成酶(NRPS)和聚酮合酶1型(T1PKS)。据我们所知,这是[此处原文缺失相关真菌名称]的首个全基因组序列报告。KHW - 7的WGS分析表明,这种海洋来源的真菌可能是生物活性次级代谢产物和重要工业酶的高效生产者,这两者都需要进一步的研究和开发。