三种拟南芥 UMP 激酶在嘧啶核苷酸生物合成和(脱氧)CMP 补救中具有不同的作用。
Three Arabidopsis UMP kinases have different roles in pyrimidine nucleotide biosynthesis and (deoxy)CMP salvage.
机构信息
Department of Molecular Nutrition and Biochemistry of Plants, Leibniz Universität Hannover, Hannover 30419, Germany.
Department of Biostatistics, Institute of Cell Biology and Biophysics, Leibniz Universität Hannover, Hannover 30419, Germany.
出版信息
Plant Cell. 2024 Sep 3;36(9):3611-3630. doi: 10.1093/plcell/koae170.
Pyrimidine nucleotide monophosphate biosynthesis ends in the cytosol with uridine monophosphate (UMP). UMP phosphorylation to uridine diphosphate (UDP) by UMP KINASEs (UMKs) is required for the generation of all pyrimidine (deoxy)nucleoside triphosphates as building blocks for nucleic acids and central metabolites like UDP-glucose. The Arabidopsis (Arabidopsis thaliana) genome encodes five UMKs and three belong to the AMP KINASE (AMK)-like UMKs, which were characterized to elucidate their contribution to pyrimidine metabolism. Mitochondrial UMK2 and cytosolic UMK3 are evolutionarily conserved, whereas cytosolic UMK1 is specific to the Brassicaceae. In vitro, all UMKs can phosphorylate UMP, cytidine monophosphate (CMP) and deoxycytidine monophosphate (dCMP), but with different efficiencies. Clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated nuclease 9 (Cas9)-induced null mutants were generated for UMK1 and UMK2, but not for UMK3, since frameshift alleles were lethal for germline cells. However, a mutant with diminished UMK3 activity showing reduced growth was obtained. Metabolome analyses of germinating seeds and adult plants of single- and higher-order mutants revealed that UMK3 plays an indispensable role in the biosynthesis of all pyrimidine (deoxy)nucleotides and UDP-sugars, while UMK2 is important for dCMP recycling that contributes to mitochondrial DNA stability. UMK1 is primarily involved in CMP recycling. We discuss the specific roles of these UMKs referring also to the regulation of pyrimidine nucleoside triphosphate synthesis.
嘧啶核苷酸单磷酸生物合成在细胞质中以尿苷单磷酸 (UMP) 结束。UMP 激酶 (UMKs) 将 UMP 磷酸化为尿苷二磷酸 (UDP),是生成所有嘧啶(脱氧)核苷三磷酸作为核酸和中央代谢物如 UDP-葡萄糖构建块所必需的。拟南芥(Arabidopsis thaliana)基因组编码五个 UMK,其中三个属于 AMP 激酶 (AMK)-样 UMK,对其进行了特征分析,以阐明它们对嘧啶代谢的贡献。线粒体 UMK2 和细胞质 UMK3 在进化上是保守的,而细胞质 UMK1 是特定于十字花科的。在体外,所有 UMK 都可以磷酸化 UMP、胞苷单磷酸 (CMP) 和脱氧胞苷单磷酸 (dCMP),但效率不同。针对 UMK1 和 UMK2 生成了 CRISPR/CRISPR 相关核酸酶 9 (Cas9) 诱导的缺失突变体,但针对 UMK3 没有生成,因为移码等位基因对生殖细胞是致命的。然而,获得了一个 UMK3 活性降低、生长受到抑制的突变体。对单突变体和多突变体萌发种子和成年植物的代谢组分析表明,UMK3 在所有嘧啶(脱氧)核苷酸和 UDP-糖的生物合成中起着不可或缺的作用,而 UMK2 对有助于线粒体 DNA 稳定性的 dCMP 循环再利用很重要。UMK1 主要参与 CMP 循环再利用。我们讨论了这些 UMK 的特定作用,同时还提到了嘧啶核苷三磷酸合成的调节。